; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCRS2-associated factor 2, chloroplastic
Genome locationchr04:9390013..9392987
RNA-Seq ExpressionLsi04G009200
SyntenyLsi04G009200
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
InterPro domainsIPR044599 - CRS2-associated factor, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33825.1 RNA splicing factor [Cucumis melo subsp. melo]2.6e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

KAG7032293.1 CRS2-associated factor 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.5e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSE PKVK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQV+M GPF LG+YP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q  +L+  +  F L+         DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

TYK15617.1 RNA splicing factor [Cucumis melo var. makuwa]2.6e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

XP_008446191.1 PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis melo]2.6e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

XP_038892001.1 CRS2-associated factor 2, chloroplastic [Benincasa hispida]3.1e-4065.99Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETPKVK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQM GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

TrEMBL top hitse value%identityAlignment
A0A1S3BF54 CRS2-associated factor 2, chloroplastic1.3e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

A0A5A7ST68 RNA splicing factor1.3e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

A0A5D3CUP7 RNA splicing factor1.3e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

A0A6J1K284 CRS2-associated factor 2, chloroplastic4.9e-3963.95Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSE PKVK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQV+M GPF LG+YP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

E5GBI3 RNA splicing factor1.3e-3964.63Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETP VK +A  E  FLPF PP MP+PWTG APLKSSKKK PLF+SF+ P   +  VKQVQ+ GPF LGQYP+EGKSREEILGEPLKNWEIR  MLVK
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P LSHN Q            L R        DGLT NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

SwissProt top hitse value%identityAlignment
Q5VMQ5 CRS2-associated factor 1, chloroplastic2.0e-2145.27Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPE-EGKSREEILGEPLKNWEIRMCMLV
        +Y+ETP+ + VA  EA FLPF P + P+PWTG  PL  S+K+ P F+SF LP      VK VQ  GPF  G  P  +  SREE+LGEPL   E+    LV
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPE-EGKSREEILGEPLKNWEIRMCMLV

Query:  KPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        K  L    Q            + R        DGLT NMLE IHSHWK
Subjt:  KPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

Q657G7 CRS2-associated factor 2, chloroplastic7.8e-1840.13Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKK---------TPLFNSFDLPSSR---VKQVQMLGPFTLGQY-PEEGKSREEILGEPLKN
        +YSE P+   VA  E  FLPF PP MP+PWTG APL + ++K         TPL        S    + +V+      L +  P +G+SREE+LGEPL  
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKK---------TPLFNSFDLPSSR---VKQVQMLGPFTLGQY-PEEGKSREEILGEPLKN

Query:  WEIRMCMLVKPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
         E+R   LVKP +SHN Q            + R        DGLT NMLE+IH HW+
Subjt:  WEIRMCMLVKPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

Q84N48 CRS2-associated factor 2, chloroplastic5.9e-1839.49Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKK---------TPLFNSFDLPSSR---VKQVQMLGPFTLGQY-PEEGKSREEILGEPLKN
        +YSE P+   +A  E  FLPF PP MP+PWTG APL + ++K         TPL        S    + +V+      L +  P +G+SREE+LGEPL  
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKK---------TPLFNSFDLPSSR---VKQVQMLGPFTLGQY-PEEGKSREEILGEPLKN

Query:  WEIRMCMLVKPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
         E+R   LVKP +SHN Q            + R        DGLT NMLE+IH HW+
Subjt:  WEIRMCMLVKPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

Q84N49 CRS2-associated factor 1, chloroplastic1.3e-2043.92Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLPS---SRVKQVQMLGPFTLGQYPE-EGKSREEILGEPLKNWEIRMCMLV
        +Y+E P+ + VA  EA F+PF P   P+PWTG  PL  S+K+ P F+SF LP+     VK VQ  GPF  G  P  +  SRE+ILGEPL   E+    LV
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLPS---SRVKQVQMLGPFTLGQYPE-EGKSREEILGEPLKNWEIRMCMLV

Query:  KPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        K  L    Q            + R        DGLT NMLE IHSHWK
Subjt:  KPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

Q9LDA9 CRS2-associated factor 2, chloroplastic5.9e-3454.42Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETPKVK V   E  F+PF PP MP+PWTG APLK SKKK PLF+SF+ P    S VK V+M GP   G+YP+EG +REE+LGEPLK WE    ML+K
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P +  N Q            L R        DG T NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

Arabidopsis top hitse value%identityAlignment
AT1G23400.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein4.2e-3554.42Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +YSETPKVK V   E  F+PF PP MP+PWTG APLK SKKK PLF+SF+ P    S VK V+M GP   G+YP+EG +REE+LGEPLK WE    ML+K
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
        P +  N Q            L R        DG T NMLELIHSHWK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK

AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein2.1e-1841.5Show/hide
Query:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK
        +Y+ETPKVK +   E  + PF P  M +PWTG APL  S+K    F+SF LP      +K VQ  GPF  G  P    S+EEILGEPL   E+R      
Subjt:  TYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLP---SSRVKQVQMLGPFTLGQYPEEGKSREEILGEPLKNWEIRMCMLVK

Query:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK
         +L  +C     LK      + R        DGLT NML  IH  WK
Subjt:  PQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTTCAACTTTTAGAGTTAGGAGGGAGAGGAAACGGCCACTTGATCAGAATACTTTAAAGGAAACAATAAGTAAAATAACAAGCACACGAAATTGCACTTACTC
CGAGACCCCCAAAGTCAAGCTCGTTGCAAATCTCGAGGCGAATTTTCTACCCTTTACACCTCCCATGATGCCAAAGCCCTGGACCGGTAATGCTCCATTGAAGAGCTCGA
AGAAGAAAACTCCTCTCTTCAATTCCTTCGATCTACCCTCTTCTAGAGTTAAGCAAGTCCAAATGCTTGGCCCGTTCACGCTTGGCCAATATCCCGAGGAGGGGAAAAGC
AGAGAGGAGATTCTTGGGGAACCCCTTAAGAATTGGGAGATTCGCATGTGCATGCTGGTGAAACCCCAGTTGTCACATAATTGCCAGTTCTATGATCTACTGAAGTTGGT
GACCCTTTTTGGTTTGAATCGGACTTGGACGTGTTGGGATCGAAGTGATGGACTTACGCAAAATATGTTGGAATTGATACATTCACATTGGAAATTTGGACGCGGCAGCA
TGTCTGTAAAGTTCGTTGCAAAGGTGTTCCCACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACTTCAACTTTTAGAGTTAGGAGGGAGAGGAAACGGCCACTTGATCAGAATACTTTAAAGGAAACAATAAGTAAAATAACAAGCACACGAAATTGCACTTACTC
CGAGACCCCCAAAGTCAAGCTCGTTGCAAATCTCGAGGCGAATTTTCTACCCTTTACACCTCCCATGATGCCAAAGCCCTGGACCGGTAATGCTCCATTGAAGAGCTCGA
AGAAGAAAACTCCTCTCTTCAATTCCTTCGATCTACCCTCTTCTAGAGTTAAGCAAGTCCAAATGCTTGGCCCGTTCACGCTTGGCCAATATCCCGAGGAGGGGAAAAGC
AGAGAGGAGATTCTTGGGGAACCCCTTAAGAATTGGGAGATTCGCATGTGCATGCTGGTGAAACCCCAGTTGTCACATAATTGCCAGTTCTATGATCTACTGAAGTTGGT
GACCCTTTTTGGTTTGAATCGGACTTGGACGTGTTGGGATCGAAGTGATGGACTTACGCAAAATATGTTGGAATTGATACATTCACATTGGAAATTTGGACGCGGCAGCA
TGTCTGTAAAGTTCGTTGCAAAGGTGTTCCCACAGTAG
Protein sequenceShow/hide protein sequence
MVTSTFRVRRERKRPLDQNTLKETISKITSTRNCTYSETPKVKLVANLEANFLPFTPPMMPKPWTGNAPLKSSKKKTPLFNSFDLPSSRVKQVQMLGPFTLGQYPEEGKS
REEILGEPLKNWEIRMCMLVKPQLSHNCQFYDLLKLVTLFGLNRTWTCWDRSDGLTQNMLELIHSHWKFGRGSMSVKFVAKVFPQ