; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSHSP domain-containing protein
Genome locationchr04:9837099..9837551
RNA-Seq ExpressionLsi04G009480
SyntenyLsi04G009480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS70261.1 Os01g0136050, partial [Oryza sativa Japonica Group]6.8e-2760.42Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        M   SGF +S  G VTV TPFS+LAFT STLAFSGSLN  MN PLLRS  CHLSFLSS SLL  PLI  TLPSSTST TS  L PGRS +K    GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLR
        S R L K  +S +E   +A   E + P  GSQ S   GS  LLR
Subjt:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLR

CAB3496390.1 unnamed protein product [Digitaria exilis]2.3e-2755.56Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        M L SGF +S+ G VTV TPFS+ A   S LAFSGSLNL  N PLLRS  CH SF SS SLL SPLI +TLPSS ST TS    PG S +K WA GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEE---GRLASEFENENPWNGSQTSNENGSKMLLRRLPKML
        SMR      +S + E    RL     N   W GSQ S E GS  LLRR+  M+
Subjt:  SMRVLTKVEISGAEE---GRLASEFENENPWNGSQTSNENGSKMLLRRLPKML

KVI11914.1 hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus]2.2e-3364.38Show/hide
Query:  SGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQSMRV
        +GFF+S+FG V V TPFSI AFT S  AFSG+LNLL+NFPLLRS LCH+SFLSS S  LSPLICK L SSTST TS  LIPGRS +K  A GVSFQS RV
Subjt:  SGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQSMRV

Query:  LTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML
         TK E+S  E      E       NGSQ S  NGSKML RR PK L
Subjt:  LTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML

RWR97332.1 hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae]1.2e-2666.67Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        M L+SGF + + G VTV TPFSI AFTSSTLAFSG+LN L N PLL S  CHLSF SS SLLLSPLI +TLPSS+ST TS    PGRS +K WA GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEIS
        S++ LTK ++S
Subjt:  SMRVLTKVEIS

VFQ82571.1 unnamed protein product [Cuscuta campestris]3.5e-3159.18Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        MDL SGFF+S+ G VTV TPFS+ AFT S  AFSGS N   N PLLRS  CHLS  SS SLLLSPLICK LPSSTST TS    PGRS +  W  GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLP
        S+R     ++S      + + FEN NPW GSQ S ENGS   LR  P
Subjt:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLP

TrEMBL top hitse value%identityAlignment
A0A0A0KSC0 Uncharacterized protein7.5e-5682.67Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        MDLISGFFSS  G +TVRTPFS+LAFTSSTLAFSGSLNLLMNFP LRSILCHLSF SSCSLLLSPLICKTLPSSTSTLTS  LIPGRS +KMWACGVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML
        SMRVL K E+S AEEG LA EFE   P  GSQ SNE GSK LLRR PKML
Subjt:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML

A0A0P0UXN9 Os01g0136050 protein (Fragment)3.3e-2760.42Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        M   SGF +S  G VTV TPFS+LAFT STLAFSGSLN  MN PLLRS  CHLSFLSS SLL  PLI  TLPSSTST TS  L PGRS +K    GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLR
        S R L K  +S +E   +A   E + P  GSQ S   GS  LLR
Subjt:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLR

A0A103YMN4 Uncharacterized protein (Fragment)1.1e-3364.38Show/hide
Query:  SGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQSMRV
        +GFF+S+FG V V TPFSI AFT S  AFSG+LNLL+NFPLLRS LCH+SFLSS S  LSPLICK L SSTST TS  LIPGRS +K  A GVSFQS RV
Subjt:  SGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQSMRV

Query:  LTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML
         TK E+S  E      E       NGSQ S  NGSKML RR PK L
Subjt:  LTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML

A0A484M1B1 Uncharacterized protein1.7e-3159.18Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        MDL SGFF+S+ G VTV TPFS+ AFT S  AFSGS N   N PLLRS  CHLS  SS SLLLSPLICK LPSSTST TS    PGRS +  W  GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLP
        S+R     ++S      + + FEN NPW GSQ S ENGS   LR  P
Subjt:  SMRVLTKVEISGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLP

A0A7C9D9Y3 Uncharacterized protein5.0e-3664.24Show/hide
Query:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ
        M   SGFFSST G VTV TPFSI AFTSS LAFSG  N   N PL RS  CHLSF SSCSL+LSPLI + LPSSTST TS  L PGRST+  WA GVSFQ
Subjt:  MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQ

Query:  SMRVLTKVEIS-GAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML
        S  VLT  ++S  AE G      E++NP NGSQTS ENGS  L+ RLPK L
Subjt:  SMRVLTKVEIS-GAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGATTTCAGGCTTCTTCTCTTCCACTTTTGGTAATGTCACAGTCAGAACTCCATTTTCCATACTGGCTTTCACTTCTTCAACCTTGGCATTCTCGGGCAGCCT
GAATCTCCTCATGAACTTCCCACTGCTTCGTTCAATTCTATGCCATTTGTCGTTCCTCTCTTCCTGTTCTTTGCTTCTTTCTCCACTGATCTGCAAAACTCTGCCTTCTT
CAACCTCAACTTTGACTTCTTGTTTGTTGATTCCGGGGAGATCGACTGTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGACAAAAGTAGAGATT
TCAGGAGCAGAGGAAGGAAGATTAGCCAGTGAGTTTGAGAATGAAAATCCATGGAATGGATCCCAAACATCTAATGAAAATGGGTCAAAGATGTTGCTCCGGCGACTACC
AAAAATGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGATTTCAGGCTTCTTCTCTTCCACTTTTGGTAATGTCACAGTCAGAACTCCATTTTCCATACTGGCTTTCACTTCTTCAACCTTGGCATTCTCGGGCAGCCT
GAATCTCCTCATGAACTTCCCACTGCTTCGTTCAATTCTATGCCATTTGTCGTTCCTCTCTTCCTGTTCTTTGCTTCTTTCTCCACTGATCTGCAAAACTCTGCCTTCTT
CAACCTCAACTTTGACTTCTTGTTTGTTGATTCCGGGGAGATCGACTGTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGACAAAAGTAGAGATT
TCAGGAGCAGAGGAAGGAAGATTAGCCAGTGAGTTTGAGAATGAAAATCCATGGAATGGATCCCAAACATCTAATGAAAATGGGTCAAAGATGTTGCTCCGGCGACTACC
AAAAATGCTTTGA
Protein sequenceShow/hide protein sequence
MDLISGFFSSTFGNVTVRTPFSILAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFLSSCSLLLSPLICKTLPSSTSTLTSCLLIPGRSTVKMWACGVSFQSMRVLTKVEI
SGAEEGRLASEFENENPWNGSQTSNENGSKMLLRRLPKML