; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L35a-1
Genome locationchr04:9843982..9845659
RNA-Seq ExpressionLsi04G009490
SyntenyLsi04G009490
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR018266 - Ribosomal protein L35Ae, conserved site
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463199.1 PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo]1.8e-5698.21Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

XP_022139205.1 60S ribosomal protein L35a-1-like [Momordica charantia]5.7e-5594.64Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGR+GERVRLY RGT+LGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

XP_022156899.1 60S ribosomal protein L35a-1 [Momordica charantia]4.4e-5595.54Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGR+GERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

XP_022957040.1 60S ribosomal protein L35a-1 [Cucurbita moschata]8.8e-5697.32Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

XP_038891868.1 60S ribosomal protein L35a-1 [Benincasa hispida]1.8e-5698.21Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

TrEMBL top hitse value%identityAlignment
A0A0A0KM11 Uncharacterized protein8.6e-5798.21Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

A0A1S3CIN8 60S ribosomal protein L35a-18.6e-5798.21Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

A0A5A7T1I6 Ribosomal protein L35A8.6e-5798.21Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

A0A6J1GZF1 60S ribosomal protein L35a-14.3e-5697.32Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

A0A6J1IM24 60S ribosomal protein L35a-1-like4.3e-5697.32Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
        D VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

SwissProt top hitse value%identityAlignment
P41056 60S ribosomal protein L33-B1.4e-2755.24Show/hide
Query:  ERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDSVRVFM
        E  RLY +G  L Y+RSK    PN SL++IEGV +  E  +Y GKR+AY+Y+A  +  GS  R +WGKV+R HGNSG+VRA F++NLP K+ G SVR+F+
Subjt:  ERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDSVRVFM

Query:  YPSNI
        YPSNI
Subjt:  YPSNI

P51422 60S ribosomal protein L35a-49.5e-5385.59Show/hide
Query:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  SVRVFMYPSNI
         VRVFMYPSNI
Subjt:  SVRVFMYPSNI

Q9C912 60S ribosomal protein L35a-33.9e-5487.5Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
          VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

Q9FZH0 60S ribosomal protein L35a-27.3e-5385.59Show/hide
Query:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  SVRVFMYPSNI
         VRVFMYPSNI
Subjt:  SVRVFMYPSNI

Q9LMK0 60S ribosomal protein L35a-13.9e-5487.5Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
          VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein2.7e-5587.5Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
          VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

AT1G41880.1 Ribosomal protein L35Ae family protein5.2e-5485.59Show/hide
Query:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  SVRVFMYPSNI
         VRVFMYPSNI
Subjt:  SVRVFMYPSNI

AT1G74270.1 Ribosomal protein L35Ae family protein2.7e-5587.5Show/hide
Query:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DSVRVFMYPSNI
          VRVFMYPSNI
Subjt:  DSVRVFMYPSNI

AT3G55750.1 Ribosomal protein L35Ae family protein6.8e-5485.59Show/hide
Query:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  SVRVFMYPSNI
         VRVFMYPSNI
Subjt:  SVRVFMYPSNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCCTTACTCCAGAT
CGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGGTACCAAGGGAAGCGATTGGCATATATCTACAAGGCTAAAGTGAAGAAGAACGGATCCCATTATCGTTGCATTTGGG
GCAAGGTTTCAAGGCCTCATGGTAACAGTGGTATCGTTAGAGCGAAGTTCAAGTCTAATCTCCCACCAAAGTCCATGGGTGACAGTGTCAGAGTATTCATGTACCCCAGC
AACATTTGA
mRNA sequenceShow/hide mRNA sequence
TAGGTTTTAGACTTCGTCGGCCGTCAAACCCTATCGCTGAAGCAGAAACCCGCCGAAGATGGTGAAAGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAA
TTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCCTTACTCCAGATCGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGGTACCAAGGGAAGCGATTG
GCATATATCTACAAGGCTAAAGTGAAGAAGAACGGATCCCATTATCGTTGCATTTGGGGCAAGGTTTCAAGGCCTCATGGTAACAGTGGTATCGTTAGAGCGAAGTTCAA
GTCTAATCTCCCACCAAAGTCCATGGGTGACAGTGTCAGAGTATTCATGTACCCCAGCAACATTTGAGCAATGGAGAACCTGATTGAAACGAGTGTTTGCTACATGAAGG
GATTTATATTTACATTATATTTTGTGAGCTGAGATAGAAGCATTTTCTGTTTCTGAACTGAGTCATTTTTTGCTGTTTAGGTAACGTTTCACACCCGAGTAGTTGAAACA
GAATTATAGAACCATTTGTCTTGAGTATTGTCATGTGTTGCGACGTAGTTGCACTTTTATCAAGTGGTTTCCCCCTATTCAAAGTCTCTACGTACTTGCATTATTTAGCC
ATTATGAAGTTGGATTATAGTTTTTATTGTAATTGTCTGGTTTCCCTTTCTATACCACTTTATTACGAGGTCATAAGATATACATTTGGTCTATTA
Protein sequenceShow/hide protein sequence
MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDSVRVFMYPS
NI