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Lsi04G009620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationchr04:10103480..10104363
RNA-Seq ExpressionLsi04G009620
SyntenyLsi04G009620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025321.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.8e-3650.96Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL          EA+   I +LK E+E++N +   FQ
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ

Query:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR
        +AL EQ  SSQ+      V  +S E YKSQL E E KN  LQ+AV S++ QL IC  AREV+TDDY +L +KYQEMS    +W+DEY  LR+ YD  I R
Subjt:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR

Query:  ARSREAKI
              K+
Subjt:  ARSREAKI

KAA0049672.1 uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]1.7e-2648.37Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL       I +L +E+E   K A   +         
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS

Query:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI
            V  +S + YKSQ  E + KN  LQ+ V S++ QL IC  AREVVTDDY +L +KYQEM     +W+DEY  LR+ YD  I
Subjt:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI

KAA0065294.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.4e-3650.96Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQM+KKNKRLL          EA+   I +LK E+E++N +A  FQ
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ

Query:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR
        +AL EQ  SSQ+      V  +  E YKSQL E + KN  LQ+AV S++ QL IC  AREV+ DDY +L +KYQEMS    +W+DEY  LR+ YD  IGR
Subjt:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR

Query:  ARSREAKI
              K+
Subjt:  ARSREAKI

TYK12200.1 uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa]1.7e-2647.42Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL       I +L +E+E   K A   +         
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS

Query:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI-----GRARS
            V  +S + YKSQ  E + KN  LQ+ V S++ QL IC  AREVVTDDY +L +KYQEM     +W+DEY  LR+ YD  I     GR +S
Subjt:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI-----GRARS

XP_008464352.1 PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]8.8e-3650.47Show/hide
Query:  HDNREKDLEQLKEMNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVA
        + ++EK+L++L+EMN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL    N     L +E+E      
Subjt:  HDNREKDLEQLKEMNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVA

Query:  ASFQSALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDS
          FQ+AL EQ  SSQ+      V  +S E YKSQL E E KN  LQ+AV S++ QL IC  AREV+TDDY +L +KYQEMS    +W+DEY  LR+ YD 
Subjt:  ASFQSALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDS

Query:  RIGRARSREAKI
         I R      K+
Subjt:  RIGRARSREAKI

TrEMBL top hitse value%identityAlignment
A0A1S3CLQ1 glial fibrillary acidic protein-like4.3e-3650.47Show/hide
Query:  HDNREKDLEQLKEMNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVA
        + ++EK+L++L+EMN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL    N     L +E+E      
Subjt:  HDNREKDLEQLKEMNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVA

Query:  ASFQSALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDS
          FQ+AL EQ  SSQ+      V  +S E YKSQL E E KN  LQ+AV S++ QL IC  AREV+TDDY +L +KYQEMS    +W+DEY  LR+ YD 
Subjt:  ASFQSALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDS

Query:  RIGRARSREAKI
         I R      K+
Subjt:  RIGRARSREAKI

A0A5A7SM49 Glial fibrillary acidic protein-like8.6e-3750.96Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL          EA+   I +LK E+E++N +   FQ
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ

Query:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR
        +AL EQ  SSQ+      V  +S E YKSQL E E KN  LQ+AV S++ QL IC  AREV+TDDY +L +KYQEMS    +W+DEY  LR+ YD  I R
Subjt:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR

Query:  ARSREAKI
              K+
Subjt:  ARSREAKI

A0A5A7U1L8 Retrotrans_gag domain-containing protein8.1e-2748.37Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL       I +L +E+E   K A   +         
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS

Query:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI
            V  +S + YKSQ  E + KN  LQ+ V S++ QL IC  AREVVTDDY +L +KYQEM     +W+DEY  LR+ YD  I
Subjt:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI

A0A5A7VDD9 Glial fibrillary acidic protein-like6.6e-3750.96Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQM+KKNKRLL          EA+   I +LK E+E++N +A  FQ
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLG---------EAQNEYIKELKQELERMNKVAASFQ

Query:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR
        +AL EQ  SSQ+      V  +  E YKSQL E + KN  LQ+AV S++ QL IC  AREV+ DDY +L +KYQEMS    +W+DEY  LR+ YD  IGR
Subjt:  SALSEQVASSQKI-----VAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGR

Query:  ARSREAKI
              K+
Subjt:  ARSREAKI

A0A5D3CLA9 Retrotrans_gag domain-containing protein8.1e-2747.42Show/hide
Query:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS
        MN VLATENE++R+EV++ VQQA + QR L+EA R   K+ ELE+E DSLN EAIQ++KKNKRLL       I +L +E+E   K A   +         
Subjt:  MNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAASFQSALSEQVAS

Query:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI-----GRARS
            V  +S + YKSQ  E + KN  LQ+ V S++ QL IC  AREVVTDDY +L +KYQEM     +W+DEY  LR+ YD  I     GR +S
Subjt:  SQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRI-----GRARS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAAACTTTGAACGTAGGCCATGACAACCGAGAAAAGGATTTAGAGCAGTTGAAGGAGATGAACCAAGTCTTAGCAACGGAAAATGAAGAGGTGAGGAAAGAGGT
TAGAAGATTGGTCCAACAAGCTACTAGTGCCCAGAGGCAATTGGAGGAGGCAAACCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGGGAAAGAGATTCTTTAAATATTG
AAGCAATCCAGATGAAAAAGAAGAATAAGAGATTATTGGGAGAAGCACAAAACGAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAGGTTGCCGCAAGT
TTCCAGAGTGCCTTAAGTGAGCAGGTCGCATCATCCCAGAAGATCGTTGCGGCAAATTCAACCGAAATGTACAAATCCCAACTGACTGAGGTAGAACGCAAAAACATGCT
TCTTCAGGAGGCTGTTACAAGTGCTAAACACCAACTATCGATTTGCCACAACGCGCGAGAGGTGGTGACAGACGACTATGGCAAGTTGAAGAAAAAGTATCAAGAAATGT
CGAAACATTCTGCTATATGGAGAGACGAGTATAGCATATTGAGGCAGAATTATGACAGCAGGATAGGTAGAGCAAGGAGCCGAGAAGCTAAGATAGATGGCAAAGATGGC
AGATCAGTTCGCAATACAGGCTACAACCCTCCGACAAGACATCATACCTATGCGGCCTGGCAGCAACGAGTTGTCTCGTTTTCTAGGGATCATAGGACAATTCGTAGAGC
ATTTTGGGTGCTATCATTAGAACTTAGGGCATACATTCACTATTGTAAAATTTTTGCATTAAAGTCATTCCTTAAT
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAAACTTTGAACGTAGGCCATGACAACCGAGAAAAGGATTTAGAGCAGTTGAAGGAGATGAACCAAGTCTTAGCAACGGAAAATGAAGAGGTGAGGAAAGAGGT
TAGAAGATTGGTCCAACAAGCTACTAGTGCCCAGAGGCAATTGGAGGAGGCAAACCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGGGAAAGAGATTCTTTAAATATTG
AAGCAATCCAGATGAAAAAGAAGAATAAGAGATTATTGGGAGAAGCACAAAACGAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAGGTTGCCGCAAGT
TTCCAGAGTGCCTTAAGTGAGCAGGTCGCATCATCCCAGAAGATCGTTGCGGCAAATTCAACCGAAATGTACAAATCCCAACTGACTGAGGTAGAACGCAAAAACATGCT
TCTTCAGGAGGCTGTTACAAGTGCTAAACACCAACTATCGATTTGCCACAACGCGCGAGAGGTGGTGACAGACGACTATGGCAAGTTGAAGAAAAAGTATCAAGAAATGT
CGAAACATTCTGCTATATGGAGAGACGAGTATAGCATATTGAGGCAGAATTATGACAGCAGGATAGGTAGAGCAAGGAGCCGAGAAGCTAAGATAGATGGCAAAGATGGC
AGATCAGTTCGCAATACAGGCTACAACCCTCCGACAAGACATCATACCTATGCGGCCTGGCAGCAACGAGTTGTCTCGTTTTCTAGGGATCATAGGACAATTCGTAGAGC
ATTTTGGGTGCTATCATTAGAACTTAGGGCATACATTCACTATTGTAAAATTTTTGCATTAAAGTCATTCCTTAAT
Protein sequenceShow/hide protein sequence
MQETLNVGHDNREKDLEQLKEMNQVLATENEEVRKEVRRLVQQATSAQRQLEEANRCLQKQPELERERDSLNIEAIQMKKKNKRLLGEAQNEYIKELKQELERMNKVAAS
FQSALSEQVASSQKIVAANSTEMYKSQLTEVERKNMLLQEAVTSAKHQLSICHNAREVVTDDYGKLKKKYQEMSKHSAIWRDEYSILRQNYDSRIGRARSREAKIDGKDG
RSVRNTGYNPPTRHHTYAAWQQRVVSFSRDHRTIRRAFWVLSLELRAYIHYCKIFALKSFLN