; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:10144712..10146118
RNA-Seq ExpressionLsi04G009670
SyntenyLsi04G009670
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]1.2e-8668.22Show/hide
Query:  EEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRAFDRALREVIGDIEISLKIGPTTFNVPF----------
        EEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRAFD A REVIGDI+I LKIGP+TFNV F          
Subjt:  EEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRAFDRALREVIGDIEISLKIGPTTFNVPF----------

Query:  -----------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQ
                                     QAIVYGEEDMFV KTS LPYVEA +EA ECSYRSF+  NATIF TEGL + RY+S+TSLMIAKTMIKSG+Q
Subjt:  -----------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQ

Query:  MHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        MH GLGK+NQG+ EVISLPKAKEKFGLGYKP+ SE EKVRA+KK+K SA L G E+++
Subjt:  MHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

KAA0043020.1 uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]5.5e-9766.22Show/hide
Query:  VLLDILNQAHVGHDIS-INALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVR
        VLLDILN+AHVGHDIS ++ALSEI++NI AT+CISFTDEEIPP+G GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+ S MVVR
Subjt:  VLLDILNQAHVGHDIS-INALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVR

Query:  AFDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYR
        AFD A REVI DI+I LKIGP+TFNV                                         QAIVYGE++MFV K S LPYVEA +EA ECSYR
Subjt:  AFDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYR

Query:  SFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        SF++ NATIF  EGL + RY+S+TSLMIAKTMIKS +QMH GLGK+NQG+ +VISLPKAKEKFGLGYKP ASEWEKVRA+KK+K S  L G E+++
Subjt:  SFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

KAA0060732.1 hypothetical protein E6C27_scaffold72G00210 [Cucumis melo var. makuwa]5.7e-8670.42Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+A+VGHDIS+NALSEI++NI ATNCISFTDEEIPPEG  HTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPF-----------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDI
        FD A +EVIGDI+I LKIGP+TFN+ F                       QAIVY EEDMF+ KTS+LPYVEA +EA + SYRSF++ NATIF  EGL I
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPF-----------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDI

Query:  GRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLP
         RY+S+TSL+IAK M+KS +QMH GLGK+NQG+ EVISLP
Subjt:  GRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLP

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]1.2e-10770.85Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+AHVGHDIS+NALSEI++NIIATNCISFTDEEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRS
        FD A REVIGDI+I LKIGP+TFNV F                                       QAIVYGEEDMFV KTS LPYVEA +EA ECSYRS
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRS

Query:  FKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        F++ NATIF TEGL + RY+S+TSLMIAKTMIKSG+QMH GLGK+NQG+ EVISLPKAKE FGLGYKP+ SEWEKVRA+KK+K SA L G E+++
Subjt:  FKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]8.0e-9670.83Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+AHVGHDIS+NALSEI++NI ATNCISFTDEEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPFQAIVYGEE------DMFVIKTSALP--YVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTM
        FD A REVIGDI+I LKIGP+TFNV FQ +             ++    A+P    ++   +  CSYRSF++ NATIF TEGL + RY+S+TSLMIAKTM
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPFQAIVYGEE------DMFVIKTSALP--YVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTM

Query:  IKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        IKSG+QMH GLGK+NQG+ EVISLPKAKEKFGLGYKP+ SEWEKVRA+ K+K SA L G E+++
Subjt:  IKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase5.6e-8768.22Show/hide
Query:  EEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRAFDRALREVIGDIEISLKIGPTTFNVPF----------
        EEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRAFD A REVIGDI+I LKIGP+TFNV F          
Subjt:  EEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRAFDRALREVIGDIEISLKIGPTTFNVPF----------

Query:  -----------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQ
                                     QAIVYGEEDMFV KTS LPYVEA +EA ECSYRSF+  NATIF TEGL + RY+S+TSLMIAKTMIKSG+Q
Subjt:  -----------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQ

Query:  MHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        MH GLGK+NQG+ EVISLPKAKEKFGLGYKP+ SE EKVRA+KK+K SA L G E+++
Subjt:  MHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

A0A5A7TI68 Uncharacterized protein2.7e-9766.22Show/hide
Query:  VLLDILNQAHVGHDIS-INALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVR
        VLLDILN+AHVGHDIS ++ALSEI++NI AT+CISFTDEEIPP+G GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+ S MVVR
Subjt:  VLLDILNQAHVGHDIS-INALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVR

Query:  AFDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYR
        AFD A REVI DI+I LKIGP+TFNV                                         QAIVYGE++MFV K S LPYVEA +EA ECSYR
Subjt:  AFDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYR

Query:  SFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        SF++ NATIF  EGL + RY+S+TSLMIAKTMIKS +QMH GLGK+NQG+ +VISLPKAKEKFGLGYKP ASEWEKVRA+KK+K S  L G E+++
Subjt:  SFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

A0A5A7UXY1 Uncharacterized protein2.8e-8670.42Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+A+VGHDIS+NALSEI++NI ATNCISFTDEEIPPEG  HTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPF-----------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDI
        FD A +EVIGDI+I LKIGP+TFN+ F                       QAIVY EEDMF+ KTS+LPYVEA +EA + SYRSF++ NATIF  EGL I
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPF-----------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDI

Query:  GRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLP
         RY+S+TSL+IAK M+KS +QMH GLGK+NQG+ EVISLP
Subjt:  GRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLP

A0A5A7V681 Retrotrans_gag domain-containing protein5.7e-10870.85Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+AHVGHDIS+NALSEI++NIIATNCISFTDEEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRS
        FD A REVIGDI+I LKIGP+TFNV F                                       QAIVYGEEDMFV KTS LPYVEA +EA ECSYRS
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPF---------------------------------------QAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRS

Query:  FKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        F++ NATIF TEGL + RY+S+TSLMIAKTMIKSG+QMH GLGK+NQG+ EVISLPKAKE FGLGYKP+ SEWEKVRA+KK+K SA L G E+++
Subjt:  FKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

A0A5A7VAU5 Uncharacterized protein3.9e-9670.83Show/hide
Query:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA
        VLLDILN+AHVGHDIS+NALSEI++NI ATNCISFTDEEIPPEG GHTKALHIS+K +D+HVARVLVDNGSSLNIMSRSTLMKLPIDPSYL+PSTMVVRA
Subjt:  VLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRA

Query:  FDRALREVIGDIEISLKIGPTTFNVPFQAIVYGEE------DMFVIKTSALP--YVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTM
        FD A REVIGDI+I LKIGP+TFNV FQ +             ++    A+P    ++   +  CSYRSF++ NATIF TEGL + RY+S+TSLMIAKTM
Subjt:  FDRALREVIGDIEISLKIGPTTFNVPFQAIVYGEE------DMFVIKTSALP--YVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTM

Query:  IKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ
        IKSG+QMH GLGK+NQG+ EVISLPKAKEKFGLGYKP+ SEWEKVRA+ K+K SA L G E+++
Subjt:  IKSGYQMHGGLGKNNQGNPEVISLPKAKEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGCTTGATATCTTAAATCAAGCACATGTGGGCCATGACATTTCGATAAATGCACTTAGTGAAATTATTGATAATATAATTGCTACAAATTGTATCTCTTTTAC
AGATGAAGAGATCCCCCCGGAAGGTATTGGGCACACTAAAGCTTTGCACATATCGATAAAATATGAGGACTATCATGTGGCTAGGGTCCTTGTCGATAATGGATCATCCC
TGAACATTATGTCAAGATCCACTTTGATGAAACTTCCTATAGATCCCTCCTATTTGAAGCCGAGTACCATGGTAGTTAGAGCCTTTGACCGTGCTCTTAGAGAAGTGATT
GGAGACATAGAAATTTCGTTAAAAATTGGGCCCACCACTTTCAACGTACCATTTCAGGCCATTGTTTATGGAGAGGAAGACATGTTTGTCATAAAAACGTCAGCACTTCC
TTATGTTGAAGCAGCAAAAGAAGCTTTTGAGTGCTCTTACAGATCATTTAAAGTCGTTAATGCTACTATTTTTTCAACTGAAGGTTTAGATATTGGTCGTTATATGTCCC
GAACATCGCTAATGATTGCAAAAACGATGATAAAGAGTGGTTATCAGATGCATGGAGGTTTGGGAAAGAACAATCAAGGAAACCCAGAGGTGATTTCTCTTCCCAAGGCT
AAGGAAAAGTTTGGATTGGGATATAAGCCAATAGCTTCTGAATGGGAGAAGGTTCGGGCAGAGAAGAAGAAAAAAGGAAGTGCATGCCTCGAAGGACGTGAGGTCGAACA
AGGGTCGAAAATAGGGACGATGGAGACGAAAACTACATTGATGAAAGTGTTGATTTCGAAGTTTCAATCTGTAATCTCGAGCAAACTCTGGAAGACTAATGCGATATATC
ACTCGAGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGCTTGATATCTTAAATCAAGCACATGTGGGCCATGACATTTCGATAAATGCACTTAGTGAAATTATTGATAATATAATTGCTACAAATTGTATCTCTTTTAC
AGATGAAGAGATCCCCCCGGAAGGTATTGGGCACACTAAAGCTTTGCACATATCGATAAAATATGAGGACTATCATGTGGCTAGGGTCCTTGTCGATAATGGATCATCCC
TGAACATTATGTCAAGATCCACTTTGATGAAACTTCCTATAGATCCCTCCTATTTGAAGCCGAGTACCATGGTAGTTAGAGCCTTTGACCGTGCTCTTAGAGAAGTGATT
GGAGACATAGAAATTTCGTTAAAAATTGGGCCCACCACTTTCAACGTACCATTTCAGGCCATTGTTTATGGAGAGGAAGACATGTTTGTCATAAAAACGTCAGCACTTCC
TTATGTTGAAGCAGCAAAAGAAGCTTTTGAGTGCTCTTACAGATCATTTAAAGTCGTTAATGCTACTATTTTTTCAACTGAAGGTTTAGATATTGGTCGTTATATGTCCC
GAACATCGCTAATGATTGCAAAAACGATGATAAAGAGTGGTTATCAGATGCATGGAGGTTTGGGAAAGAACAATCAAGGAAACCCAGAGGTGATTTCTCTTCCCAAGGCT
AAGGAAAAGTTTGGATTGGGATATAAGCCAATAGCTTCTGAATGGGAGAAGGTTCGGGCAGAGAAGAAGAAAAAAGGAAGTGCATGCCTCGAAGGACGTGAGGTCGAACA
AGGGTCGAAAATAGGGACGATGGAGACGAAAACTACATTGATGAAAGTGTTGATTTCGAAGTTTCAATCTGTAATCTCGAGCAAACTCTGGAAGACTAATGCGATATATC
ACTCGAGTTACTAA
Protein sequenceShow/hide protein sequence
MVLLDILNQAHVGHDISINALSEIIDNIIATNCISFTDEEIPPEGIGHTKALHISIKYEDYHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLKPSTMVVRAFDRALREVI
GDIEISLKIGPTTFNVPFQAIVYGEEDMFVIKTSALPYVEAAKEAFECSYRSFKVVNATIFSTEGLDIGRYMSRTSLMIAKTMIKSGYQMHGGLGKNNQGNPEVISLPKA
KEKFGLGYKPIASEWEKVRAEKKKKGSACLEGREVEQGSKIGTMETKTTLMKVLISKFQSVISSKLWKTNAIYHSSY