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Lsi04G009760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein EARLY FLOWERING 4
Genome locationchr04:10360995..10361384
RNA-Seq ExpressionLsi04G009760
SyntenyLsi04G009760
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]1.9e-5793.02Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  HD FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5591.47Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDDG+HDGFPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFS+ FNNHK RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

XP_004149248.1 protein EARLY FLOWERING 4 [Cucumis sativus]3.5e-5691.47Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  H  FPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]1.9e-5793.02Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  HD FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

XP_038892867.1 protein EARLY FLOWERING 4-like [Benincasa hispida]2.4e-5794.66Show/hide
Query:  MADNNPRRKSKMKPSA-TTTTTTTTTTSDDGQHDG-FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVV
        MADNNPRRKSKMKPSA TTTTTTTTTTSDDG HDG FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVV
Subjt:  MADNNPRRKSKMKPSA-TTTTTTTTTTSDDGQHDG-FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVV

Query:  SMYSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        SMYSDFSSDFS+AF+NHKPRNGKRGS+NPNA
Subjt:  SMYSDFSSDFSTAFNNHKPRNGKRGSSNPNA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein1.7e-5691.47Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  H  FPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

A0A1S3CIT1 uncharacterized protein LOC1035014409.0e-5893.02Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  HD FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

A0A5A7SR92 Protein EARLY FLOWERING 49.0e-5893.02Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD  HD FPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFSTAF+NHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

A0A6J1GYX8 protein EARLY FLOWERING 4-like4.2e-5590.7Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDDG+HDGFPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFS+ FNN+K RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

A0A6J1IH33 protein EARLY FLOWERING 4-like7.9e-5489.15Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDDG+HDGFPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV+LIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSM

Query:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA
        YSDFSSDFS+ FNNHK RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFNNHKPRNGKRGSSNPNA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 41.0e-2164.29Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NV+LIQELNGNISKVV+MYSD ++ FS+ F  H  +NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRG

O80877 Protein ELF4-LIKE 11.2e-1450Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSS

Q570U6 Protein ELF4-LIKE 44.2e-1246.15Show/hide
Query:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 31.1e-1239.33Show/hide
Query:  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +       +   G  N
Subjt:  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSSN

Q94BS8 Protein ELF4-LIKE 21.0e-1042.5Show/hide
Query:  HDGFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS
        + GF + Y  D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 43.0e-1346.15Show/hide
Query:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 43.0e-1346.15Show/hide
Query:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 37.9e-1439.33Show/hide
Query:  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +       +   G  N
Subjt:  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSSN

AT2G29950.1 ELF4-like 18.4e-1650Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)7.1e-2364.29Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NV+LIQELNGNISKVV+MYSD ++ FS+ F  H  +NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFSTAFNNHKPRNGKRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATAACAACCCACGCCGCAAATCCAAAATGAAGCCTTCAGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAACACGACGGCTTCCCTGA
TGAATACGACGCCGAGGTTTGGGCCTCCTTTGACCAGACCTTCCGGCAGGTCCAATCAGTGCTGGATCGGAACAGAACTCTGATTCAACAAGTAAACGAGAATCATCAAT
CTCGAATTCCAAGCAACATGGTCGACAACGTTTCTCTCATTCAAGAACTCAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACT
GCCTTCAATAACCACAAACCCAGAAATGGTAAAAGAGGCAGCAGCAACCCAAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATAACAACCCACGCCGCAAATCCAAAATGAAGCCTTCAGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAACACGACGGCTTCCCTGA
TGAATACGACGCCGAGGTTTGGGCCTCCTTTGACCAGACCTTCCGGCAGGTCCAATCAGTGCTGGATCGGAACAGAACTCTGATTCAACAAGTAAACGAGAATCATCAAT
CTCGAATTCCAAGCAACATGGTCGACAACGTTTCTCTCATTCAAGAACTCAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACT
GCCTTCAATAACCACAAACCCAGAAATGGTAAAAGAGGCAGCAGCAACCCAAATGCTTGA
Protein sequenceShow/hide protein sequence
MADNNPRRKSKMKPSATTTTTTTTTTSDDGQHDGFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVSLIQELNGNISKVVSMYSDFSSDFST
AFNNHKPRNGKRGSSNPNA