; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPHD finger protein ALFIN-LIKE 2-like
Genome locationchr04:10489977..10491110
RNA-Seq ExpressionLsi04G009810
SyntenyLsi04G009810
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002533379.1 PHD finger protein ALFIN-LIKE 2 [Ricinus communis]7.2e-6085.19Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPR+VE+IFKDYNARR+GLVRALTYDVDEFYS CDPEKENLCLYGHPNESWEVTLPAEEVP ELPEPALGINFARDGM R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD
        LLSVAFYFGA+LNRNER   F L       P LFD
Subjt:  LLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD

XP_008463243.1 PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo]4.1e-6395.93Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGAQLNRNER   F +
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

XP_011654991.1 PHD finger protein ALFIN-LIKE 2 [Cucumis sativus]4.1e-6395.93Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGAQLNRNER   F +
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

XP_022156923.1 PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]1.9e-6092.68Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPRSVEDIFKDY+ARR GLVRALTYDVDEFYSLCDPEKENLCLYGH NESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGA+LNRNER   F L
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

XP_038893084.1 PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]4.1e-6395.93Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGAQLNRNER   F +
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

TrEMBL top hitse value%identityAlignment
A0A0A0KP44 Uncharacterized protein5.7e-63100Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNER
        LLSVAFYFGAQLNRNER
Subjt:  LLSVAFYFGAQLNRNER

A0A1S3CJ59 PHD finger protein ALFIN-LIKE 2-like2.0e-6395.93Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGAQLNRNER   F +
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

A0A5D3DUV1 PHD finger protein ALFIN-LIKE 2-like2.0e-6395.93Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGAQLNRNER   F +
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

A0A6J1DRX5 PHD finger protein ALFIN-LIKE 2-like9.2e-6192.68Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPRSVEDIFKDY+ARR GLVRALTYDVDEFYSLCDPEKENLCLYGH NESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSVAFYFGA+LNRNER   F L
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

B9T560 Phd/F-box containing protein, putative3.5e-6085.19Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPR+VE+IFKDYNARR+GLVRALTYDVDEFYS CDPEKENLCLYGHPNESWEVTLPAEEVP ELPEPALGINFARDGM R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD
        LLSVAFYFGA+LNRNER   F L       P LFD
Subjt:  LLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD

SwissProt top hitse value%identityAlignment
B8AMA8 PHD finger protein ALFIN-LIKE 31.1e-5076.23Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A ++S+PR+VEDIFKDY+ARR  LVRALT DVDEF+ LCDP+KENLCLYG  N SWEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERTLAFQL
        +SVAF+F A+LN NER   F +
Subjt:  LSVAFYFGAQLNRNERTLAFQL

B8B8I3 PHD finger protein ALFIN-LIKE 21.4e-5379.51Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PR+VEDIFKD++ RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERTLAFQL
        LSVAF+FGA+LN NER   F L
Subjt:  LSVAFYFGAQLNRNERTLAFQL

Q8H383 PHD finger protein ALFIN-LIKE 21.4e-5379.51Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PR+VEDIFKD++ RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERTLAFQL
        LSVAF+FGA+LN NER   F L
Subjt:  LSVAFYFGAQLNRNERTLAFQL

Q9FFF5 PHD finger protein ALFIN-LIKE 11.0e-5377.24Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSV+ YFGA+LNRNER   F L
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

Q9SRM4 PHD finger protein ALFIN-LIKE 21.6e-5777.61Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++SS+PR+VE+IFKDY+ARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD
        LSV+FYFGA+LNRNER   F L       P LFD
Subjt:  LSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD

Arabidopsis top hitse value%identityAlignment
AT2G02470.1 alfin-like 69.7e-4769.49Show/hide
Query:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY
        PR+VE++F D+  RR GL++ALT D+ +FY  CDPEKENLCLYG PNE+WEV LP EEVP ELPEPALGINFARDGM+ +DW+SLVAVHSD WLLSVAFY
Subjt:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY

Query:  FGAQ--LNRNERTLAFQL
        FGA+    +NER   FQ+
Subjt:  FGAQ--LNRNERTLAFQL

AT2G02470.2 alfin-like 69.7e-4769.49Show/hide
Query:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY
        PR+VE++F D+  RR GL++ALT D+ +FY  CDPEKENLCLYG PNE+WEV LP EEVP ELPEPALGINFARDGM+ +DW+SLVAVHSD WLLSVAFY
Subjt:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY

Query:  FGAQ--LNRNERTLAFQL
        FGA+    +NER   FQ+
Subjt:  FGAQ--LNRNERTLAFQL

AT3G11200.1 alfin-like 21.1e-5877.61Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++SS+PR+VE+IFKDY+ARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD
        LSV+FYFGA+LNRNER   F L       P LFD
Subjt:  LSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFD

AT5G05610.1 alfin-like 17.4e-5577.24Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSV+ YFGA+LNRNER   F L
Subjt:  LLSVAFYFGAQLNRNERTLAFQL

AT5G05610.2 alfin-like 17.4e-5577.24Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERTLAFQL
        LLSV+ YFGA+LNRNER   F L
Subjt:  LLSVAFYFGAQLNRNERTLAFQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTA
CTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGG
CGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCT
CAACTCAACCGTAATGAGCGTACTCTTGCATTCCAATTAAGTGCACCTTGGCTATGTTATCCTAATTTGTTTGATGACTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAGTAGATTAATATTTATAAATAGCGTGGGATGTAGCCAAAGCCAAAAAACCAAAAGCCAAACTCAACGATCCGTCCAAGAGGTTCCAAGTTTATCGATGCTGCTCA
CTGGGCAGTGATCACTCCGATCTCTTCGACTTCTGCAAATTTCCATACCAATTTACTCCATCAATCAAATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATC
TTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGG
ACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGGCGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAG
ACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGTACTCTTGCATTCCAATTAAGT
GCACCTTGGCTATGTTATCCTAATTTGTTTGATGACTAA
Protein sequenceShow/hide protein sequence
MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGA
QLNRNERTLAFQLSAPWLCYPNLFDD