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Lsi04G009820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPHD finger protein ALFIN-LIKE 2-like
Genome locationchr04:10500418..10503521
RNA-Seq ExpressionLsi04G009820
SyntenyLsi04G009820
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001965 - Zinc finger, PHD-type
IPR011011 - Zinc finger, FYVE/PHD-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR019786 - Zinc finger, PHD-type, conserved site
IPR019787 - Zinc finger, PHD-finger
IPR044104 - Alfin1-like, PHD finger
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463243.1 PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo]1.5e-6497.58Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAENIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

XP_011654991.1 PHD finger protein ALFIN-LIKE 2 [Cucumis sativus]3.4e-6496.77Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKR+LDGS RNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICE+WFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAENIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

XP_022156923.1 PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]1.3e-6395.2Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFS+INDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIR+SN KLL+ESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGRP
        RITPAKAENIKQYKCPSCSTKRGRP
Subjt:  RITPAKAENIKQYKCPSCSTKRGRP

XP_022957000.1 PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata]2.6e-6496.77Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESYGE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKA+NIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

XP_038893084.1 PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]4.0e-6598.39Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAENIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

TrEMBL top hitse value%identityAlignment
A0A1S3CJ59 PHD finger protein ALFIN-LIKE 2-like7.4e-6597.58Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAENIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

A0A5D3DUV1 PHD finger protein ALFIN-LIKE 2-like7.4e-6597.58Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAENIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

A0A6J1DRX5 PHD finger protein ALFIN-LIKE 2-like6.3e-6495.2Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFS+INDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIR+SN KLL+ESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGRP
        RITPAKAENIKQYKCPSCSTKRGRP
Subjt:  RITPAKAENIKQYKCPSCSTKRGRP

A0A6J1GZB1 PHD finger protein ALFIN-LIKE 2-like1.3e-6496.77Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESYGE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKA+NIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

A0A6J1J9S6 PHD finger protein ALFIN-LIKE 2-like1.3e-6496.77Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESYGE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKA+NIKQYKCPSCSTKRGR
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

SwissProt top hitse value%identityAlignment
A2Y0Q2 PHD finger protein ALFIN-LIKE 18.0e-4060.32Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVK--DKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGK
        RKRLF M+NDLPT++EV SG +  K  D+  MD  S+++ S+K + D +   +N K  +E Y ED+ +H +TLCG+CGG Y+ADEFWIGCD+CERW+HGK
Subjt:  RKRLFSMINDLPTLFEVASGRKAVK--DKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGK

Query:  CVRITPAKAENIKQYKCPSCSTKRGR
        CV+ITPAKAE+IKQYKCPSCS+KR R
Subjt:  CVRITPAKAENIKQYKCPSCSTKRGR

B8AMA8 PHD finger protein ALFIN-LIKE 39.4e-4159.68Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLF+MINDLPT++E    RK V+D+  +D+  KS++STKR+ +G ++ S  +++ E Y +D++EH +T CG+CGG YNA+EFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAE+IK YKCP CS+   +
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

Q84TV4 PHD finger protein ALFIN-LIKE 39.4e-4159.68Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV
        RKRLF+MINDLPT++E    RK V+D+  +D+  KS++STKR+ +G ++ S  +++ E Y +D++EH +T CG+CGG YNA+EFWIGCDICERWFHGKCV
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCV

Query:  RITPAKAENIKQYKCPSCSTKRGR
        RITPAKAE+IK YKCP CS+   +
Subjt:  RITPAKAENIKQYKCPSCSTKRGR

Q9FFF5 PHD finger protein ALFIN-LIKE 15.3e-5276Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC
        RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EESY +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKC
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC

Query:  VRITPAKAENIKQYKCPSCSTKRGR
        V+ITPAKAE+IKQYKCPSC TK+GR
Subjt:  VRITPAKAENIKQYKCPSCSTKRGR

Q9SRM4 PHD finger protein ALFIN-LIKE 25.9e-5174.02Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG
        RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EESY   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HG
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG

Query:  KCVRITPAKAENIKQYKCPSCSTKRGR
        KCV+ITPAKAE+IKQYKCP C  K+GR
Subjt:  KCVRITPAKAENIKQYKCPSCSTKRGR

Arabidopsis top hitse value%identityAlignment
AT3G11200.1 alfin-like 24.2e-5274.02Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG
        RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EESY   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HG
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG

Query:  KCVRITPAKAENIKQYKCPSCSTKRGR
        KCV+ITPAKAE+IKQYKCP C  K+GR
Subjt:  KCVRITPAKAENIKQYKCPSCSTKRGR

AT3G11200.2 alfin-like 24.2e-5274.02Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG
        RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EESY   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HG
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHG

Query:  KCVRITPAKAENIKQYKCPSCSTKRGR
        KCV+ITPAKAE+IKQYKCP C  K+GR
Subjt:  KCVRITPAKAENIKQYKCPSCSTKRGR

AT3G42790.1 alfin-like 35.8e-3859.69Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKDKPSM--DTGSKSRNSTK-RSLDG-SIRNSNPKLLEESYGE-DEDEHGDTLCGSCGGNYNADEFWIGCDICERWF
        RKRLF+MIND+PT+FEV +G    KDK S     G+KS++++K R+ +G S +   PK  +E   E DED+HG+TLCG+CG +  ADEFWI CD+CE+WF
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKDKPSM--DTGSKSRNSTK-RSLDG-SIRNSNPKLLEESYGE-DEDEHGDTLCGSCGGNYNADEFWIGCDICERWF

Query:  HGKCVRITPAKAENIKQYKCPSCSTKRGR
        HGKCV+ITPA+AE+IKQYKCPSCS KR R
Subjt:  HGKCVRITPAKAENIKQYKCPSCSTKRGR

AT5G05610.1 alfin-like 13.8e-5376Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC
        RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EESY +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKC
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC

Query:  VRITPAKAENIKQYKCPSCSTKRGR
        V+ITPAKAE+IKQYKCPSC TK+GR
Subjt:  VRITPAKAENIKQYKCPSCSTKRGR

AT5G05610.2 alfin-like 13.8e-5376Show/hide
Query:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC
        RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EESY +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKC
Subjt:  RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKC

Query:  VRITPAKAENIKQYKCPSCSTKRGR
        V+ITPAKAE+IKQYKCPSC TK+GR
Subjt:  VRITPAKAENIKQYKCPSCSTKRGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATC
CAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTG
GGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAAT
ATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATC
CAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTG
GGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAAT
ATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAGCGCGCGGAAACACCTTAATGTAAAGCACATTTTGTGGCAGTTAACCTTTATGTGTCTTG
GGAAAACTCTTGGTAAGGACCAAAAGAAGTGAAGGTACATGTTAGGGGATTTACTTGTGAGGGGTTTATAGGGGGTTATAAAGTTAACACTCTAACGGATAAGCAAGCAT
GAGTTGAAGCTAGTTTTCTTTTCGTTTTATTCATACATGTTCGTGTCGTATAGTGTTCGGTGTTTAAAGATTGAATCTCGTCTTCTTCGTTTATAATATGAAATGATCTG
ATCCTTCATGTTAGGCTATATTTCTTGTGGGGTTTTGGCCTTTTGGGGCATCATTATTTGGCAGTTATTATTTAGCATACAAGTAAGCTTGTGTTGACTCTACTGTCTAA
AGATTGCTCTTTTGGAGTGGTTAAATTTCAGATATGTTTGAATTC
Protein sequenceShow/hide protein sequence
MRKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAEN
IKQYKCPSCSTKRGRP