; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G009860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionOmega-3 fatty acid desaturase
Genome locationchr04:10682189..10683016
RNA-Seq ExpressionLsi04G009860
SyntenyLsi04G009860
Gene Ontology termsGO:0006629 - lipid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (molecular function)
InterPro domainsIPR005804 - Fatty acid desaturase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599992.1 Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

KAG7030666.1 Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

XP_022995701.1 omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita maxima]2.0e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

XP_023547843.1 omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo]2.0e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

XP_038892287.1 omega-3 fatty acid desaturase, chloroplastic [Benincasa hispida]9.2e-5598.04Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

TrEMBL top hitse value%identityAlignment
A0A1S3CNS0 omega-3 fatty acid desaturase, chloroplastic1.3e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPV GKYYREPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

A0A5A7UH66 Omega-3 fatty acid desaturase1.3e-5497.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPV GKYYREPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

A0A6J1FSG4 omega-3 fatty acid desaturase, chloroplastic-like3.8e-5496.08Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVS+SGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

A0A6J1K2M7 omega-3 fatty acid desaturase, chloroplastic-like9.9e-5597.06Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR+PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

B3VA19 Omega-3 fatty acid desaturase4.9e-5494.12Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHV+HHLFPQIPHYHLIEATEATKP+ GKYYREPEKSWPLPFHLLGVLV+S+RKDHFVSDSGDIVYYQTDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

SwissProt top hitse value%identityAlignment
P48618 Omega-3 fatty acid desaturase, chloroplastic (Fragment)1.0e-4883.17Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYG INNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYREP+KS PLP HLLG+L KS+++DHFVSD GD+VYY+ DP+
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  L
        L
Subjt:  L

P48619 Omega-3 fatty acid desaturase, chloroplastic2.7e-4985Show/hide
Query:  WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS
        WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPV+GKYYREP+KS PLP HLLG LV+SM++DH+VSD+GD+VYYQ DP LS
Subjt:  WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS

P48620 Omega-3 fatty acid desaturase, chloroplastic2.4e-5085.29Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEA KPVLGKYYREP+KS PLPFHLLG L +S+++DH+VSD GD+VYYQTDP 
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        L+
Subjt:  LS

P48622 Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic9.2e-5083.33Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYREP+ S PLP HLLG L+KSM++DHFVSD+GD+VYY+ DP 
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        L+
Subjt:  LS

Q56VS4 sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic4.1e-5084.31Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTT+DRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEA KPVLGKYYREP+KS P+PFHLLG LV+S++KDH+VSD+GD++YYQTD  
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        LS
Subjt:  LS

Arabidopsis top hitse value%identityAlignment
AT2G29980.1 fatty acid desaturase 37.8e-4474.26Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTT+DRDYG  NNIHHDIGTHVIHHLFPQIPHYHL++AT+A K VLG+YYREP+ S  +P HL+  LV S++KDH+VSD+GDIV+Y+TDPD
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  L
        L
Subjt:  L

AT3G11170.1 fatty acid desaturase 75.2e-4880.2Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYG INNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYREP+KS PLP HLL +L KS+++DH+VSD G++VYY+ DP+
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  L
        L
Subjt:  L

AT3G12120.1 fatty acid desaturase 21.4e-1654.55Show/hide
Query:  EWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSW
        EW +LRG L T+DRDYG +N + H+I  THV HHLF  +PHY+ +EAT+A KP+LG YY+     W
Subjt:  EWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSW

AT5G05580.1 fatty acid desaturase 86.6e-5183.33Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYREP+ S PLP HLLG L+KSM++DHFVSD+GD+VYY+ DP 
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPD

Query:  LS
        L+
Subjt:  LS

AT5G05580.2 fatty acid desaturase 85.2e-2491.84Show/hide
Query:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATE
        +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EA +
Subjt:  QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAACAGGAATGGAGTTACCTAAGAGGAGGATTAACCACTCTCGATCGCGATTATGGATGGATCAACAACATCCATCACGACATTGGAACTCATGTCATTCACCA
TCTCTTCCCTCAGATCCCACACTATCACTTAATAGAAGCAACTGAGGCAACAAAGCCGGTGCTCGGGAAGTATTATCGGGAACCAGAAAAATCTTGGCCTCTTCCATTTC
ACTTATTGGGAGTTCTTGTAAAAAGCATGAGAAAGGATCACTTTGTGAGCGATTCCGGGGACATCGTATATTATCAAACCGACCCCGACCTGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAAACAGGAATGGAGTTACCTAAGAGGAGGATTAACCACTCTCGATCGCGATTATGGATGGATCAACAACATCCATCACGACATTGGAACTCATGTCATTCACCA
TCTCTTCCCTCAGATCCCACACTATCACTTAATAGAAGCAACTGAGGCAACAAAGCCGGTGCTCGGGAAGTATTATCGGGAACCAGAAAAATCTTGGCCTCTTCCATTTC
ACTTATTGGGAGTTCTTGTAAAAAGCATGAGAAAGGATCACTTTGTGAGCGATTCCGGGGACATCGTATATTATCAAACCGACCCCGACCTGTCTTGATAAAAGCAACAG
GAGTGAGATCTGCTCATTATCTTTCAACTATTATACATCGAAATTCTTTGCGAATAGCTTGTGAGCCATTCGAGTTTAAAATATGATCAGTTGCCAAGAAAACTTAAAGA
GAGAAGAAGTTGTTGTTCATGAATCATGATGATAGTATTCATGCTTCAGGGTATTAGAGTTACATATTATTTATAGCCACATGAAAGAAAAATTTGGCATTGTTTTTGCT
TCAAGTATGTTTAATAAACTATTAGTGAACCACAATGCTATCAATTCATATGGGAGGAGTCAATTTATTTTGAATTGTTCTAAAATGTGGGTTCCCCCCTTAACTTCCAG
TCCAATGGAGAGTTCTGTGATGTGGTTTTAAAATACAAAGTAAATGCTACCATTTCATGAGCTAAAAAA
Protein sequenceShow/hide protein sequence
MIKQEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS