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Lsi04G010080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:11340351..11340782
RNA-Seq ExpressionLsi04G010080
SyntenyLsi04G010080
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011655051.1 uncharacterized protein LOC105435471 [Cucumis sativus]7.6e-5276.55Show/hide
Query:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWL--RRRGGAAVPRCVSQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECL
        MQ SASLI      PPPPP  HRPSTA FP  RPT ++SSPWL  R     A PRCVSQGGWG S  V E+DIEEWLKLGRLEEKCGGGGKG+VELLECL
Subjt:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWL--RRRGGAAVPRCVSQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECL

Query:  EREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        E+EAIMGEDEGRDPTDY+RRAKIFSTSS+VFQALKQHSDA  PPP
Subjt:  EREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

XP_022942933.1 uncharacterized protein LOC111447817 [Cucurbita moschata]3.1e-5381.88Show/hide
Query:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG
        SASLI     PPP PP FHR ST VF K RP SAIS  WL RR  AA PRCVSQGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIMG
Subjt:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG

Query:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        EDEGR+PTDY+RRAKIFSTSS+VFQALKQHSDAAP PP
Subjt:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

XP_022988679.1 uncharacterized protein LOC111485933 [Cucurbita maxima]8.1e-5481.75Show/hide
Query:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG
        SASLII    PPP P  FHR ST VFPK RP SAIS PW  RR  AA PRCVSQGGWGGSVAE +IEEWLKLGRL+EKCGGGGKG+VELLECLEREAIMG
Subjt:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG

Query:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP
        EDEGR+PTDY+RRAKIFSTSS+VFQALKQHSDAAP P
Subjt:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP

XP_023547061.1 uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo]2.8e-5481.88Show/hide
Query:  FSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM
        FSASLII    PPP PP  HR ST  FPK RP SAIS PW  RR  AA PRCVSQGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIM
Subjt:  FSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM

Query:  GEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP
        GEDEGR+PTDY+RRAKIFSTSS+VFQALKQHSDAAP P
Subjt:  GEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP

XP_038892559.1 uncharacterized protein LOC120081603 [Benincasa hispida]2.1e-6287.23Show/hide
Query:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA
        MQ SASLII    PPPPPPSFHRPSTAVFPKFRPT  ISSPWLR R GA  PRCVSQGGWGGSVAELDIEEWLK G+LEEKCGGGGKG+VELLECLE+EA
Subjt:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA

Query:  IMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        IMGEDEG+DPTDY+RRAKIFSTSSKVFQALKQHSDAA PPP
Subjt:  IMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

TrEMBL top hitse value%identityAlignment
A0A0A0KQQ4 Uncharacterized protein3.7e-5276.55Show/hide
Query:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWL--RRRGGAAVPRCVSQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECL
        MQ SASLI      PPPPP  HRPSTA FP  RPT ++SSPWL  R     A PRCVSQGGWG S  V E+DIEEWLKLGRLEEKCGGGGKG+VELLECL
Subjt:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWL--RRRGGAAVPRCVSQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECL

Query:  EREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        E+EAIMGEDEGRDPTDY+RRAKIFSTSS+VFQALKQHSDA  PPP
Subjt:  EREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

A0A1S3C540 uncharacterized protein LOC1034967604.1e-5175.52Show/hide
Query:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAV--PRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLER
        MQ SASLIIPPP          RPSTA FPK R T A+SSPWL  R   AV  PRCVSQGGWG SVAE+DIEEWLKLGRLEEKCG GGKG+VELLECLE+
Subjt:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAV--PRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLER

Query:  EAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        EAIMGEDEGR+PTDY+RRAKIFSTSS+VFQALKQH D   PPP
Subjt:  EAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

A0A5D3DSR0 Uncharacterized protein4.1e-5175.52Show/hide
Query:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAV--PRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLER
        MQ SASLIIPPP          RPSTA FPK R T A+SSPWL  R   AV  PRCVSQGGWG SVAE+DIEEWLKLGRLEEKCG GGKG+VELLECLE+
Subjt:  MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAV--PRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLER

Query:  EAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        EAIMGEDEGR+PTDY+RRAKIFSTSS+VFQALKQH D   PPP
Subjt:  EAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

A0A6J1FW01 uncharacterized protein LOC1114478171.5e-5381.88Show/hide
Query:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG
        SASLI     PPP PP FHR ST VF K RP SAIS  WL RR  AA PRCVSQGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIMG
Subjt:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG

Query:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP
        EDEGR+PTDY+RRAKIFSTSS+VFQALKQHSDAAP PP
Subjt:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPP

A0A6J1JM89 uncharacterized protein LOC1114859333.9e-5481.75Show/hide
Query:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG
        SASLII    PPP P  FHR ST VFPK RP SAIS PW  RR  AA PRCVSQGGWGGSVAE +IEEWLKLGRL+EKCGGGGKG+VELLECLEREAIMG
Subjt:  SASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMG

Query:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP
        EDEGR+PTDY+RRAKIFSTSS+VFQALKQHSDAAP P
Subjt:  EDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G05220.1 unknown protein1.3e-1742.15Show/hide
Query:  PSTAVFPKFRPTSAISSPWL----RRRGGAAVPRCVSQGG-WGGSVAELDIEEWLKLGRLEEKCGGG-GKGLVELLECLEREAIMGEDEGRDPTDYDRRA
        PS  ++    P +AI    L    ++    A  RCV+ G  +  ++  +  EE  +L +    CGG   +G+ ELLECLE+EAIMG D+GRDP DY+RRA
Subjt:  PSTAVFPKFRPTSAISSPWL----RRRGGAAVPRCVSQGG-WGGSVAELDIEEWLKLGRLEEKCGGG-GKGLVELLECLEREAIMGEDEGRDPTDYDRRA

Query:  KIFSTSSKVFQALKQHSDAAP
        KIF  SSK+F+ L +  D AP
Subjt:  KIFSTSSKVFQALKQHSDAAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTCTCTGCATCTCTCATAATACCACCGCCACCGCCACCGCCACCGCCACCCTCCTTCCATCGCCCCTCCACCGCCGTCTTCCCCAAGTTCAGGCCAACTTCAGC
CATTTCCTCACCATGGCTCCGCCGTCGAGGTGGGGCGGCAGTGCCAAGATGTGTTAGTCAGGGTGGGTGGGGAGGCTCTGTGGCGGAGCTAGACATAGAAGAGTGGCTGA
AGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGATTGGTGGAGTTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGACGAAGGTAGAGACCCT
ACAGATTACGATAGGAGAGCTAAGATTTTTAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTCCTCCGCCCGTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATTCTCTGCATCTCTCATAATACCACCGCCACCGCCACCGCCACCGCCACCCTCCTTCCATCGCCCCTCCACCGCCGTCTTCCCCAAGTTCAGGCCAACTTCAGC
CATTTCCTCACCATGGCTCCGCCGTCGAGGTGGGGCGGCAGTGCCAAGATGTGTTAGTCAGGGTGGGTGGGGAGGCTCTGTGGCGGAGCTAGACATAGAAGAGTGGCTGA
AGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGATTGGTGGAGTTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGACGAAGGTAGAGACCCT
ACAGATTACGATAGGAGAGCTAAGATTTTTAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTCCTCCGCCCGTATCTTGA
Protein sequenceShow/hide protein sequence
MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDP
TDYDRRAKIFSTSSKVFQALKQHSDAAPPPPVS