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Lsi04G010140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationchr04:11451808..11452486
RNA-Seq ExpressionLsi04G010140
SyntenyLsi04G010140
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR044893 - RNA polymerase Rpb1, clamp domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1856155.1 hypothetical protein Lal_00044965 [Lupinus albus]1.1e-3075.27Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM
        GN RVIGD+K+D +FCEQC V+FVDSRIRRY+MGYIKLACPV HVWYLK LPSYIANLLD+ LKELEGL    I NEKL   S EL CPG DM
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM

KAF1859153.1 hypothetical protein Lal_00000984 [Lupinus albus]2.7e-2972.04Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM
        G  ++IGD+K+D +FCEQC V+FVDSRIRRY+MGYIKLACPV HVWYLK LPSYIANLLD+ LKELEGL    I NEKL   S EL CPG DM
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM

KAF3449773.1 hypothetical protein FNV43_RR05851 [Rhamnella rubrinervis]4.2e-3581.72Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI--QNEKLSSHSTELRCPGSDMWL
        GN RVIGD+KE+ KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+   N+KLSSHS EL CPGSDM L
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI--QNEKLSSHSTELRCPGSDMWL

KAF4348577.1 hypothetical protein F8388_000256 [Cannabis sativa]2.8e-3182.76Show/hide
Query:  VIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPGSDMWL
        VIG+ KED KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL  NEKLSSHS EL CP  DM L
Subjt:  VIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPGSDMWL

TYI09268.1 hypothetical protein ES332_A09G060400v1 [Gossypium tomentosum]1.2e-3481.05Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDMWL
        GN RVIG+QKE  KFCEQC V+FVDSRIRRYQMGYI+LACPV HVWYLK LPSYIANLLD+PLKELEGL    I+NEKLSSHS EL CPGSDM L
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDMWL

TrEMBL top hitse value%identityAlignment
A0A290Y2F2 DNA-directed RNA polymerase subunit beta'3.7e-2975.58Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPG
        GN RVIG QKED+KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+  + ++   T LR  G
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPG

A0A5D2NYW8 DNA-directed RNA polymerase subunit6.0e-3581.05Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDMWL
        GN RVIG+QKE  KFCEQC V+FVDSRIRRYQMGYI+LACPV HVWYLK LPSYIANLLD+PLKELEGL    I+NEKLSSHS EL CPGSDM L
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDMWL

A0A6A5L9K7 DNA-directed RNA polymerase subunit5.2e-3175.27Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM
        GN RVIGD+K+D +FCEQC V+FVDSRIRRY+MGYIKLACPV HVWYLK LPSYIANLLD+ LKELEGL    I NEKL   S EL CPG DM
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM

A0A6A5LHF9 DNA-directed RNA polymerase subunit1.3e-2972.04Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM
        G  ++IGD+K+D +FCEQC V+FVDSRIRRY+MGYIKLACPV HVWYLK LPSYIANLLD+ LKELEGL    I NEKL   S EL CPG DM
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGL----IQNEKLSSHSTELRCPGSDM

A0A7J6DR54 Multifunctional fusion protein1.4e-3182.76Show/hide
Query:  VIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPGSDMWL
        VIG+ KED KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL  NEKLSSHS EL CP  DM L
Subjt:  VIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPGSDMWL

SwissProt top hitse value%identityAlignment
A4QK09 DNA-directed RNA polymerase subunit beta'2.5e-3085.71Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI
        GN RVIGD+KEDSKFCEQC V+F+DSRIRRYQMGYIKL CPV HVWYLK LPSYIANLLD+PLKELEGL+
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI

B1A926 DNA-directed RNA polymerase subunit beta'2.5e-3087.14Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI
        GN RVIGD+KED KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI

Q06RE0 DNA-directed RNA polymerase subunit beta'1.9e-3083.56Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNE
        GN RVIGD+KED KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+  +
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNE

Q4VZP2 DNA-directed RNA polymerase subunit beta'8.6e-3188.57Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI
        GN RVIGD+KEDSKFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI

Q8S8Y0 DNA-directed RNA polymerase subunit beta'2.5e-3087.14Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI
        GN RVIGD+KED KFCEQC V+FVDSRIRRYQMGYIKLACPV HVWYLK LPSYIANLLD+PLKELEGL+
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI

Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein5.2e-3185.71Show/hide
Query:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI
        GN RVIGD+KED KFCEQC V+FVDSRIRRYQMGYIKL CPV HVWYLK LPSYIANLLD+PLKELEGL+
Subjt:  GNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACTCTCGAGTAATAGGAGATCAAAAAGAAGATTCGAAATTTTGTGAACAATGTGAAGTTAAATTTGTTGATTCTCGAATACGAAGATACCAAATGGGTTATAT
TAAACTGGCATGCCCAGTAATCCATGTGTGGTATTTGAAACATCTTCCTAGTTATATCGCTAATCTTTTAGATCAACCTCTTAAAGAATTAGAAGGCTTAATTCAAAATG
AGAAACTGTCATCTCATTCAACTGAATTGAGATGCCCCGGATCTGATATGTGGCTTGCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACTCTCGAGTAATAGGAGATCAAAAAGAAGATTCGAAATTTTGTGAACAATGTGAAGTTAAATTTGTTGATTCTCGAATACGAAGATACCAAATGGGTTATAT
TAAACTGGCATGCCCAGTAATCCATGTGTGGTATTTGAAACATCTTCCTAGTTATATCGCTAATCTTTTAGATCAACCTCTTAAAGAATTAGAAGGCTTAATTCAAAATG
AGAAACTGTCATCTCATTCAACTGAATTGAGATGCCCCGGATCTGATATGTGGCTTGCTTGGTAG
Protein sequenceShow/hide protein sequence
MGNSRVIGDQKEDSKFCEQCEVKFVDSRIRRYQMGYIKLACPVIHVWYLKHLPSYIANLLDQPLKELEGLIQNEKLSSHSTELRCPGSDMWLAW