; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G010220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010220
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr04:11604730..11605026
RNA-Seq ExpressionLsi04G010220
SyntenyLsi04G010220
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147002.1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial isoform X1 [Cucumis sativus]2.8e-3787.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

XP_023004202.1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X1 [Cucurbita maxima]1.6e-3786.17Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        MLHECAS  SLG AK I GL+VKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGFVNDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

XP_023004203.1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 [Cucurbita maxima]1.6e-3786.17Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        MLHECAS  SLG AK I GL+VKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGFVNDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

XP_031745040.1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial isoform X2 [Cucumis sativus]2.8e-3787.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

XP_038898110.1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 [Benincasa hispida]2.8e-3785.11Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        +LHECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGL+AEGF NDSIYL+QEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

TrEMBL top hitse value%identityAlignment
A0A0A0K4Y9 DYW_deaminase domain-containing protein1.3e-3787.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

A0A5A7VA11 Pentatricopeptide repeat-containing protein1.3e-3787.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

A0A6J1H8P7 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X11.7e-3786.17Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        +LHECAS  SLG AK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGFVNDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

A0A6J1KPS1 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X17.8e-3886.17Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        MLHECAS  SLG AK I GL+VKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGFVNDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

A0A6J1KYS7 pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X27.8e-3886.17Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP
        MLHECAS  SLG AK I GL+VKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD DVVSWTALIQGLVAEGFVNDSIYLFQEMQ +   P
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP

SwissProt top hitse value%identityAlignment
O04590 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial2.8e-0838.57Show/hide
Query:  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL
        DS  W ++++ YAK R    A L+  KMP+ + VSW+A+I G    G V+ ++ LF++M +K+S P+ +L
Subjt:  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL

O49399 Pentatricopeptide repeat-containing protein At4g188402.8e-0835.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ
        +L  CA+       + I GL +K  +  D  +  +LVNVY +  Y   AR VL +MP  D VSW +L+   + +G V+++  LF EM+
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ

O64705 Pentatricopeptide repeat-containing protein At2g344001.6e-0832.14Show/hide
Query:  CASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ
        CA    +GV +++   + K  +  D H+  SL+ +YAKC    YAR +  ++ + D VSW ++I G    G+  D++ LF++M+
Subjt:  CASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ

Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic9.6e-0934.48Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEM
        +L  C  +  L V K I GL+VK   + D      L N+YAKCR  + AR V  +MP+ D+VSW  ++ G    G    ++ + + M
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEM

Q9ZVG8 Pentatricopeptide repeat-containing protein At1g26900, mitochondrial3.7e-0834.41Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC
        +L  CA   +  V +T+  L+ ++ I  D+ L  +LV++YAK      A  +  +M D DV SWTA+I G  A G   +++ LF +M+ +E+C
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein6.8e-1034.48Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEM
        +L  C  +  L V K I GL+VK   + D      L N+YAKCR  + AR V  +MP+ D+VSW  ++ G    G    ++ + + M
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEM

AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein2.6e-0934.41Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC
        +L  CA   +  V +T+  L+ ++ I  D+ L  +LV++YAK      A  +  +M D DV SWTA+I G  A G   +++ LF +M+ +E+C
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC

AT1G62260.1 mitochondrial editing factor 92.0e-0938.57Show/hide
Query:  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL
        DS  W ++++ YAK R    A L+  KMP+ + VSW+A+I G    G V+ ++ LF++M +K+S P+ +L
Subjt:  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL

AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.2e-0932.14Show/hide
Query:  CASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ
        CA    +GV +++   + K  +  D H+  SL+ +YAKC    YAR +  ++ + D VSW ++I G    G+  D++ LF++M+
Subjt:  CASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ

AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.0e-0935.23Show/hide
Query:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ
        +L  CA+       + I GL +K  +  D  +  +LVNVY +  Y   AR VL +MP  D VSW +L+   + +G V+++  LF EM+
Subjt:  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATGAATGTGCATCAAAATGGTCTTTGGGTGTTGCAAAAACCATTCCTGGGCTTATTGTGAAGGATGTAATTAATCCAGATTCCCATTTGTGGGTTTCGTTGGT
GAATGTATATGCAAAGTGCAGGTACTCTTCATATGCTCGATTAGTGCTTGCTAAAATGCCTGATCATGATGTTGTTTCTTGGACGGCATTAATTCAAGGTCTTGTAGCAG
AAGGATTTGTTAACGATAGTATTTATTTATTTCAGGAGATGCAAATGAAGGAATCATGCCCAATGAGTTCACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATGAATGTGCATCAAAATGGTCTTTGGGTGTTGCAAAAACCATTCCTGGGCTTATTGTGAAGGATGTAATTAATCCAGATTCCCATTTGTGGGTTTCGTTGGT
GAATGTATATGCAAAGTGCAGGTACTCTTCATATGCTCGATTAGTGCTTGCTAAAATGCCTGATCATGATGTTGTTTCTTGGACGGCATTAATTCAAGGTCTTGTAGCAG
AAGGATTTGTTAACGATAGTATTTATTTATTTCAGGAGATGCAAATGAAGGAATCATGCCCAATGAGTTCACTCTAG
Protein sequenceShow/hide protein sequence
MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL