; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G010410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionS1-like domain-containing protein
Genome locationchr04:12193020..12197889
RNA-Seq ExpressionLsi04G010410
SyntenyLsi04G010410
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146450.1 probable RNA-binding protein EIF1AD [Cucumis sativus]2.9e-2089.39Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGDRNENLQAQNN+  ED   EV+SSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
XP_008456911.1 PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo]2.9e-2087.88Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGDRNENL+AQNN+ EED   EV+SSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
XP_022991942.1 probable RNA-binding protein EIF1AD [Cucurbita maxima]5.0e-2084.85Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAI GD+NENLQA+NNRQEED   E+DSSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
XP_038891512.1 probable RNA-binding protein EIF1AD isoform X1 [Benincasa hispida]2.2e-2392.42Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGD+NENLQAQNNR EEDEV EVDSSDDDGLPPLEANTNR KPLILQPD ESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
XP_038891513.1 probable RNA-binding protein EIF1AD isoform X2 [Benincasa hispida]2.2e-2392.42Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGD+NENLQAQNNR EEDEV EVDSSDDDGLPPLEANTNR KPLILQPD ESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
TrEMBL top hitse value%identityAlignment
A0A0A0KM30 S1-like domain-containing protein1.4e-2089.39Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGDRNENLQAQNN+  ED   EV+SSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
A0A1S3C3W3 probable RNA-binding protein EIF1AD1.4e-2087.88Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGDRNENL+AQNN+ EED   EV+SSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
A0A5D3DQ84 Putative RNA-binding protein EIF1AD1.4e-2087.88Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAIVGDRNENL+AQNN+ EED   EV+SSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
A0A6J1FVM0 probable RNA-binding protein EIF1AD7.1e-2083.33Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAI GD+NENLQ +NNRQEED   E+DSSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
A0A6J1JNB5 probable RNA-binding protein EIF1AD2.4e-2084.85Show/hide
Query:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFKNAI GD+NENLQA+NNRQEED   E+DSSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Subjt:  PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G40780.1 Nucleic acid-binding, OB-fold-like protein8.9e-0749.28Show/hide
Query:  PEIFKNA--IVGDRNENLQAQNNRQEEDEVAEVDSS-DDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFK+   I  +++  ++     Q ED+  EVDSS DDDG+PPL+ANTNR +P  ++ DAE++S SDS
Subjt:  PEIFKNA--IVGDRNENLQAQNNRQEEDEVAEVDSS-DDDGLPPLEANTNRAKPLILQPDAESESDSDS
AT2G40780.2 Nucleic acid-binding, OB-fold-like protein8.9e-0749.28Show/hide
Query:  PEIFKNA--IVGDRNENLQAQNNRQEEDEVAEVDSS-DDDGLPPLEANTNRAKPLILQPDAESESDSDS
        PEIFK+   I  +++  ++     Q ED+  EVDSS DDDG+PPL+ANTNR +P  ++ DAE++S SDS
Subjt:  PEIFKNA--IVGDRNENLQAQNNRQEEDEVAEVDSS-DDDGLPPLEANTNRAKPLILQPDAESESDSDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAAACCAGGATGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAATGAAAATCTGCAAGCACAGAATAATCGACAAGAAGAGGATGAGGTTGCTGAGGT
CGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGATGCAGAATCAGAGTCTGATTCAGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAAACCAGGATGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAATGAAAATCTGCAAGCACAGAATAATCGACAAGAAGAGGATGAGGTTGCTGAGGT
CGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGATGCAGAATCAGAGTCTGATTCAGATTCTTAAC
TTGTATATTAATTTTAATTCCACACTTTTTGACTTAACAACTATGAATATTCATTTTGATCGTTTATTGTTAAATTTTAATTTTGTAAGTAACAGAAATTTCTGACTACC
TAATTTTAAATCTGATATAATAAGTAATGATCTATGCAGTTTAGAATATCG
Protein sequenceShow/hide protein sequence
MQETRMPEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS