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Lsi04G010460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide-like helical
Genome locationchr04:12333923..12334312
RNA-Seq ExpressionLsi04G010460
SyntenyLsi04G010460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600897.1 hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia]8.4e-4282.35Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS T LQQFAK+ V SKKPQSAAP PKSRIRVSP ETPI  TVRVISE   KKKNM    EEKNR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

XP_022957582.1 uncharacterized protein LOC111458931 [Cucurbita moschata]8.4e-4282.35Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS T LQQFAK+ V SKKPQSAAP PKSRIRVSP ETPI  TVRVISE   KKKNM    EEKNR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

XP_022991950.1 uncharacterized protein LOC111488439 [Cucurbita maxima]5.4e-4180.67Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS + LQQFAK+ V SKKPQSAAP PKSRIRVSP ETPI  TVRVISE   KKKNMEE+    NR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

XP_023536449.1 uncharacterized protein LOC111797620 [Cucurbita pepo subsp. pepo]1.6e-4080.67Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS T LQQFAK+ V SKKPQSAAP PKSRIRVS  ETPI  TVRVISE   KKKNM    E+KNR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

XP_038892993.1 uncharacterized protein LOC120081889 [Benincasa hispida]3.7e-5090Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEE-KEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSM
        MAKSLPSPTRL QFAKV+V+SKKPQSA PNPKSRIRVSPPETPISGTVRVISELKK   NMEEE KEE +RTPLADVVSDCVKRWFQDTLKEA  GDTSM
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEE-KEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSM

Query:  QVLVGQMFCSGYGVPKDTQK
        QVLVGQMFCSGYGVPKDTQK
Subjt:  QVLVGQMFCSGYGVPKDTQK

TrEMBL top hitse value%identityAlignment
A0A5D3DQA2 Uncharacterized protein4.2e-3976.67Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPSPTR QQFAK++ SSK PQS  P  KSRIR SP ETPISG+VRVI E     KN   E++EKNRTPL+DVVSDCVKRWFQDTLKEA  GDTSMQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQKV
        VLVGQMFCSGYGVPK+T+KV
Subjt:  VLVGQMFCSGYGVPKDTQKV

A0A6J1FNN7 uncharacterized protein LOC1114471035.5e-3975.63Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKS P  +RLQQFAKV+VSSKKPQS     K +IRVSPPETPIS +VRVISE  + KKNM    E KNR PLADVVSDC KRWFQDTLKEA+ GDT+MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

A0A6J1GZI5 uncharacterized protein LOC1114589314.1e-4282.35Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS T LQQFAK+ V SKKPQSAAP PKSRIRVSP ETPI  TVRVISE   KKKNM    EEKNR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

A0A6J1JUC7 uncharacterized protein LOC1114884392.6e-4180.67Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLPS + LQQFAK+ V SKKPQSAAP PKSRIRVSP ETPI  TVRVISE   KKKNMEE+    NR PLADVVSDCVKRWFQDTLKEAS GD +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

A0A6J1K2L5 uncharacterized protein LOC1114918262.2e-4077.31Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        MAKSLP  +RLQQFAKV+VSSKKPQS  P  K +IRVSPPETPIS +VRVISE  + KKNM    E KNR PLADVVSDC KRWFQDTLKEA+ GDT+MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VLVGQMFCSGYGVPKDT+K
Subjt:  VLVGQMFCSGYGVPKDTQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)3.5e-1439.5Show/hide
Query:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ
        M KS+P  T L+  +  +                I+ S P  PIS    + S  K         +  +   PL+ VVSDC KRWF+DTL+EA  G+ +MQ
Subjt:  MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQ

Query:  VLVGQMFCSGYGVPKDTQK
        VL+GQM+ SGYGVPKD +K
Subjt:  VLVGQMFCSGYGVPKDTQK

AT5G05360.1 unknown protein1.2e-1740.65Show/hide
Query:  SPTRLQQFAKVIVSSK--KPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNME--------EEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGD
        S  R  +FA  + S    +P   +P+P++++ V       +  +   + +K +K               +  NR PLA VV DCV+RWFQDTLKEA +GD
Subjt:  SPTRLQQFAKVIVSSK--KPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNME--------EEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGD

Query:  TSMQVLVGQMFCSGYGVPKDTQK
          MQVLVGQM+CSGYG+PKD  K
Subjt:  TSMQVLVGQMFCSGYGVPKDTQK

AT5G05360.2 unknown protein1.2e-1740.65Show/hide
Query:  SPTRLQQFAKVIVSSK--KPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNME--------EEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGD
        S  R  +FA  + S    +P   +P+P++++ V       +  +   + +K +K               +  NR PLA VV DCV+RWFQDTLKEA +GD
Subjt:  SPTRLQQFAKVIVSSK--KPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNME--------EEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGD

Query:  TSMQVLVGQMFCSGYGVPKDTQK
          MQVLVGQM+CSGYG+PKD  K
Subjt:  TSMQVLVGQMFCSGYGVPKDTQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAATCGCTTCCATCGCCAACTCGCCTTCAGCAATTCGCCAAGGTCATCGTCTCCTCCAAGAAGCCCCAATCCGCCGCACCTAACCCCAAGTCTCGGATCCGAGT
TTCGCCGCCCGAAACTCCGATCTCCGGTACCGTCCGAGTCATCTCGGAGCTGAAGAAGAAGAAGAAAAACATGGAGGAGGAGAAGGAGGAGAAGAATCGGACTCCGTTGG
CCGATGTGGTCTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCACCGGCGATACGTCGATGCAGGTCTTGGTAGGCCAGATGTTTTGCTCCGGC
TACGGCGTTCCTAAGGACACTCAGAAGGTTTGCTTTCTACATTTTGAGATTTCTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAATCGCTTCCATCGCCAACTCGCCTTCAGCAATTCGCCAAGGTCATCGTCTCCTCCAAGAAGCCCCAATCCGCCGCACCTAACCCCAAGTCTCGGATCCGAGT
TTCGCCGCCCGAAACTCCGATCTCCGGTACCGTCCGAGTCATCTCGGAGCTGAAGAAGAAGAAGAAAAACATGGAGGAGGAGAAGGAGGAGAAGAATCGGACTCCGTTGG
CCGATGTGGTCTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCACCGGCGATACGTCGATGCAGGTCTTGGTAGGCCAGATGTTTTGCTCCGGC
TACGGCGTTCCTAAGGACACTCAGAAGGTTTGCTTTCTACATTTTGAGATTTCTTGTTGA
Protein sequenceShow/hide protein sequence
MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSG
YGVPKDTQKVCFLHFEISC