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Lsi04G010550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionVps5 domain-containing protein
Genome locationchr04:12430717..12432468
RNA-Seq ExpressionLsi04G010550
SyntenyLsi04G010550
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0005768 - endosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0035091 - phosphatidylinositol binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RDY13168.1 hypothetical protein CR513_01945, partial [Mucuna pruriens]1.3e-0665.45Show/hide
Query:  LFESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDERCETPV
        +FESS A Y +APAVAI  ELAA VIN +KPKSAILAF++SSS  LLD R   P+
Subjt:  LFESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDERCETPV

RHN57192.1 hypothetical protein MtrunA17_Chr5g0437721 [Medicago truncatula]2.5e-0767.35Show/hide
Query:  FESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDER
        F++SG++YP+APAVAIT ELAA VI LD+PKS ILAF++SSS  LL+ R
Subjt:  FESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDER

RYR00032.1 hypothetical protein Ahy_B07g088085 isoform A [Arachis hypogaea]5.4e-2672.73Show/hide
Query:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP
        +SNSSP VDASLI+S S TSLVHSS TI+ATHCGKSTPF+ASPG LPV+SS+ ITPRL           FESSGARYP+APAVAIT ELAAAVINL++P
Subjt:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP

RYR00033.1 hypothetical protein Ahy_B07g088085 isoform B [Arachis hypogaea]5.4e-2672.73Show/hide
Query:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP
        +SNSSP VDASLI+S S TSLVHSS TI+ATHCGKSTPF+ASPG LPV+SS+ ITPRL           FESSGARYP+APAVAIT ELAAAVINL++P
Subjt:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP

TrEMBL top hitse value%identityAlignment
A0A371IDS7 Uncharacterized protein (Fragment)6.1e-0765.45Show/hide
Query:  LFESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDERCETPV
        +FESS A Y +APAVAI  ELAA VIN +KPKSAILAF++SSS  LLD R   P+
Subjt:  LFESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDERCETPV

A0A396HV16 Uncharacterized protein1.2e-0767.35Show/hide
Query:  FESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDER
        F++SG++YP+APAVAIT ELAA VI LD+PKS ILAF++SSS  LL+ R
Subjt:  FESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDER

A0A444YDM6 PX domain-containing protein2.6e-2672.73Show/hide
Query:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP
        +SNSSP VDASLI+S S TSLVHSS TI+ATHCGKSTPF+ASPG LPV+SS+ ITPRL           FESSGARYP+APAVAIT ELAAAVINL++P
Subjt:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP

A0A444YDM7 Vps5 domain-containing protein2.6e-2672.73Show/hide
Query:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP
        +SNSSP VDASLI+S S TSLVHSS TI+ATHCGKSTPF+ASPG LPV+SS+ ITPRL           FESSGARYP+APAVAIT ELAAAVINL++P
Subjt:  MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRL-----------FESSGARYPSAPAVAITFELAAAVINLDKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACTCATCTCCAATGGTAGATGCATCCCTCATCAGCTCCAAATCGAAAACTTCATTAGTCCATTCCTCTTTGACGATCGATGCAACCCATTGTGGCAAATCGAC
TCCGTTCATGGCTTCACCGGGGGATTTACCAGTCAAGAGTTCTAGTATGATTACTCCAAGGCTCTTTGAGAGCTCTGGTGCTCGGTACCCGAGTGCCCCTGCTGTTGCTA
TCACATTTGAGCTTGCAGCTGCAGTCATCAACCTTGACAAGCCAAAATCTGCAATCTTAGCATTTATGTACTCATCAAGTAGAATGTTGCTGGATGAACGCTGCGAGACT
CCCGTTCGGCATGTAATCGAAAACAAGAAGCTTTTCTCCTTTGGGTCCCAAACCGTTTGGCCGTCGAAATGGACAAGCTTTCCACCAGCATCCCCTCCTCCCGCTTCAAC
TTCACTGCTAGTCGGAGGGACACCCTTCTCGGCCCTGGCAGCCCCAGCTGCTGCAGCCTCACCACCATCCTTTCCTTTTGTAGCAGCCCTTTTCCTAATCAAGCAGCAGA
GCAATACAAAGAAAACTATAACCAATACTACAAGGAGGGCTCCTGCTGCTATGAGGATTATATCTTTAGTACTTAACTTCCGATGTCGGGTTGTCAAACTTTCTGGTGGA
GGAGCAGGAGCTTCTTCAGAAGGGGCCGGGGATGGGCACGGAATCGAACCACTGAACCCACAGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAACTCATCTCCAATGGTAGATGCATCCCTCATCAGCTCCAAATCGAAAACTTCATTAGTCCATTCCTCTTTGACGATCGATGCAACCCATTGTGGCAAATCGAC
TCCGTTCATGGCTTCACCGGGGGATTTACCAGTCAAGAGTTCTAGTATGATTACTCCAAGGCTCTTTGAGAGCTCTGGTGCTCGGTACCCGAGTGCCCCTGCTGTTGCTA
TCACATTTGAGCTTGCAGCTGCAGTCATCAACCTTGACAAGCCAAAATCTGCAATCTTAGCATTTATGTACTCATCAAGTAGAATGTTGCTGGATGAACGCTGCGAGACT
CCCGTTCGGCATGTAATCGAAAACAAGAAGCTTTTCTCCTTTGGGTCCCAAACCGTTTGGCCGTCGAAATGGACAAGCTTTCCACCAGCATCCCCTCCTCCCGCTTCAAC
TTCACTGCTAGTCGGAGGGACACCCTTCTCGGCCCTGGCAGCCCCAGCTGCTGCAGCCTCACCACCATCCTTTCCTTTTGTAGCAGCCCTTTTCCTAATCAAGCAGCAGA
GCAATACAAAGAAAACTATAACCAATACTACAAGGAGGGCTCCTGCTGCTATGAGGATTATATCTTTAGTACTTAACTTCCGATGTCGGGTTGTCAAACTTTCTGGTGGA
GGAGCAGGAGCTTCTTCAGAAGGGGCCGGGGATGGGCACGGAATCGAACCACTGAACCCACAGAGCTGA
Protein sequenceShow/hide protein sequence
MSNSSPMVDASLISSKSKTSLVHSSLTIDATHCGKSTPFMASPGDLPVKSSSMITPRLFESSGARYPSAPAVAITFELAAAVINLDKPKSAILAFMYSSSRMLLDERCET
PVRHVIENKKLFSFGSQTVWPSKWTSFPPASPPPASTSLLVGGTPFSALAAPAAAASPPSFPFVAALFLIKQQSNTKKTITNTTRRAPAAMRIISLVLNFRCRVVKLSGG
GAGASSEGAGDGHGIEPLNPQS