CuGenDBv2

Gene ID	Lsi04G010610
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Genome location	chr04:12554371..12556005
RNA-Seq Expression	Lsi04G010610
Synteny	Lsi04G010610
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008454838.1 PREDICTED: uncharacterized protein LOC103495149 isoform X1 [Cucumis melo]

3.6e-27

87.5

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN DRGV VKMSNIGTKVKCSLSVSVICTTDGIQVPQILE++GPC+Y ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

XP_016901665.1 PREDICTED: uncharacterized protein LOC103495149 isoform X2 [Cucumis melo]

3.6e-27

87.5

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN DRGV VKMSNIGTKVKCSLSVSVICTTDGIQVPQILE++GPC+Y ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

XP_022957094.1 uncharacterized protein LOC111458578 [Cucurbita moschata]

5.8e-25

84.72

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN  RGVTVKMSN GTKVKCSLSVSV CTTDGIQ PQILEQ+G CEY ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

XP_023542950.1 uncharacterized protein LOC111802712 [Cucurbita pepo subsp. pepo]

5.8e-25

84.72

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN  RGVTVKMSN GTKVKCSLSVSV CTTDGIQ PQILEQ+G CEY ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

XP_038892376.1 uncharacterized protein LOC120081502 [Benincasa hispida]

4.0e-26

86.11

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCT IGL+PSTNISIIDIKN DRGVTVKMS  GTKVKCSLSVSVICTTDGIQVPQILE++GPCEY ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQL1 Uncharacterized protein

1.4e-24

81.94

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+ +TNISIIDIKN DRGV VKMSNI TKVKCSLSVSVICTTDGIQ PQILE++GPC+Y ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

A0A1S3C0Q5 uncharacterized protein LOC103495149 isoform X1

1.7e-27

87.5

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN DRGV VKMSNIGTKVKCSLSVSVICTTDGIQVPQILE++GPC+Y ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

A0A1S4E105 uncharacterized protein LOC103495149 isoform X2

1.7e-27

87.5

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN DRGV VKMSNIGTKVKCSLSVSVICTTDGIQVPQILE++GPC+Y ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

A0A6J1H0Z4 uncharacterized protein LOC111458578

2.8e-25

84.72

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISIIDIKN  RGVTVKMSN GTKVKCSLSVSV CTTDGIQ PQILEQ+G CEY ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

A0A6J1IIX2 uncharacterized protein LOC111477272

2.6e-23

80.56

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Query:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        GYDVCTTIGL+PSTNISI+DIKN  RGV VKMSN GTKVKCSLSVSV CTTDGIQ PQ LEQ+G CEY ++L
Subjt:  GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G40316.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

3.9e-11

43.42

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Query:  EDTLGYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        E+  GYDVCT++G   ST + IID ++  +GV V+MS       CSLSVSVIC    +  P  L + G C+Y + L
Subjt:  EDTLGYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

AT2G40316.2 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 135 Blast hits to 135 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 63; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

2.7e-04

36.36

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Query:  EDTLGYDVC-TTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL
        ED  G   C T+   + S N+   D ++  +GV V+MS       CSLSVSVIC    +  P  L + G C+Y + L
Subjt:  EDTLGYDVC-TTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSAL

Sequences

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CDS sequence

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mRNA sequence

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ATGTTGGAAGATACTCTAGGCTATGATGTATGCACAACCATTGGTCTTATGCCAAGCACGAACATTAGCATCATCGATATAAAAAATCTTGATAGAGGTGTCACCGTTAA
GATGTCTAACATTGGCACTAAGGTCAAATGCTCACTTTCCGTGTCTGTAATTTGTACGACAGATGGCATTCAGGTGCCACAAATTTTGGAACAGATGGGGCCTTGTGAGT
ATGTGAGTGCCTTGACTTTATAGACATGACAGCTCTTCTTAATTGCTTTTTGCCCTCTGAAATAATTGCTCTTTAGGTTCTATCATTAAATATATTTTCTTGTGCGCATC
ACCAAGACAATTGTGTATTTTTGGATAAGGCATTTGACTACCACTTTTTTAACCCTGGTATTGATCAACATAAACATTATGTGAATTAGATTGAAATTTACAATATCTTG
ATCTATTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTTTATTTTGAGGTAATATCTTAGTCTATCCACCTTCATTTTTTAATCATCCGGTCTCTTTTTGTATGATTGTCAA
GACTATTACTGTCTAATTTGGACTGTCAAATTTTAATATTTGTTATATGATACGAAAACTTGAAGAATTTAAGAAGATAAACACAAACAAGAGAGAATAATAAATACCCC
CAAGAACCAAAAAGAGCCAGAAAAGTACTATTCAATTGACGTGTTAGGAACCAAAAGAAAAGCAGAAAAGTCAAGTAGTTCATCTAGATATAAAGAAATACATCTTGGAT
ACGAGTACACAGCGTTTTTTGTACTGAAAATTGGACTCATCAGATTACTTTACAATTGAAGTTGTTTCTTATAAGCCTCTATGGAGGTGCGCATCCCTCTTATAAGCCTC
TCTACAGGTTTGGCATGAGTCTGCACATGGGAACTGGTTATATCAGCTTTCTCCATGTCCACCATTTCTGCCTTCCACAACTGTTTCACCTTGGATGCCTTTGTCATGTG
GTCAATTTTTTTCTGATATATTGATATCCTTTTTGTAGATTTCAAATACTCAAGAGTCATAAGACTCAGAACTGTTCCTATCCAATTTCATCTTGAAAACCTA

Protein sequence

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MLEDTLGYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSALTL

Lsi04G010610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome