; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G010860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G010860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr04:13085665..13087379
RNA-Seq ExpressionLsi04G010860
SyntenyLsi04G010860
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN50265.2 hypothetical protein Csa_005809 [Cucumis sativus]6.0e-6381.7Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPPQ GL AT I  LPITLYK P A++D P A A  AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL+++
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

XP_016901617.1 PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo]6.8e-6784.97Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP Q GL ATAIN LPITLYK P AE+DP A A+ AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL++V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

XP_022996486.1 RING-H2 finger protein ATL66 [Cucurbita maxima]3.0e-5473.38Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAV-AAAAGECPIC
        +LDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L TFS AVPG RS RSPPQ GL   AINC PITLYK   A ++  A  AA A EC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAV-AAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV
        LGVFEDGEKVKIL  C HC+HSECVD+WLR QSSCPLCR+S    D SNNLQ+V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV

XP_031741031.1 RING-H2 finger protein ATL66 [Cucumis sativus]2.7e-6382.35Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPPQ GL AT I  LPITLYK P A++D P A A  AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL++V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

XP_038892868.1 RING-H2 finger protein ATL66-like [Benincasa hispida]9.2e-7288.82Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICL
        +LDDRLFQIRGRTFFFVAVLFA+ILLVTFIFLYARWVCRFHQLTTF AAVPGGR PRSPPQ GL  TAINCLPI+LYK P AE+DPRA  AAAGEC ICL
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICL

Query:  GVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        GVFEDGEKVKILP CRHCYHSECVDRWLRSQSSCPLCRVS CIDTSNNLQ+V
Subjt:  GVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ2 RING-type E3 ubiquitin transferase1.3e-6382.35Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPPQ GL AT I  LPITLYK P A++D P A A  AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL++V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

A0A1S4E052 RING-type E3 ubiquitin transferase3.3e-6784.97Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP Q GL ATAIN LPITLYK P AE+DP A A+ AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL++V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

A0A5A7T2R0 RING-type E3 ubiquitin transferase3.3e-6784.97Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC
        +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP Q GL ATAIN LPITLYK P AE+DP A A+ AGEC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP-QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
        LGVFEDGEKVKILPPCRHCYHSECVDRWLRS SSCPLCRVS CID SNNL++V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV

A0A6J1FWS0 RING-type E3 ubiquitin transferase6.1e-5373.2Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICL
        +LDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTTFSA+VPG RS RSPPQ GL    INC  ITLYK    E D    AA A EC ICL
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICL

Query:  GVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV
        GVFEDGEKVKIL  C HC+HSECVD+WLR QSSCPLCR+S    D S+NLQ+V
Subjt:  GVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV

A0A6J1K4V5 RING-type E3 ubiquitin transferase1.4e-5473.38Show/hide
Query:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAV-AAAAGECPIC
        +LDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L TFS AVPG RS RSPPQ GL   AINC PITLYK   A ++  A  AA A EC IC
Subjt:  KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAV-AAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV
        LGVFEDGEKVKIL  C HC+HSECVD+WLR QSSCPLCR+S    D SNNLQ+V
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS-PCIDTSNNLQIV

SwissProt top hitse value%identityAlignment
Q8L9T5 RING-H2 finger protein ATL23.1e-1434.07Show/hide
Query:  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVF
        + +LF V++L+ F+ LYARW      R H             F  A P   +       GL    I  LP+  +   T  KDP        EC +CL  F
Subjt:  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVF

Query:  EDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCR
        E+ E  ++LP C+H +H +C+D W  S S+CPLCR
Subjt:  EDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCR

Q9LZV8 RING-H2 finger protein ATL741.7e-1556.92Show/hide
Query:  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS
        L K P AE     V  AA EC ICLG F DGE+V++LPPC H +H  C+D WL S SSCP CR S
Subjt:  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS

Q9SG96 RING-H2 finger protein ATL724.1e-1441.57Show/hide
Query:  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQI
        GL   A+  +P+ LY +         +   A EC ICLG FEDGEKV++LP C H +H  C+D WL S+SSCP CR S  ++  + + +
Subjt:  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQI

Q9SK92 E3 ubiquitin-protein ligase ATL151.4e-1436.17Show/hide
Query:  FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC
        F   GRT F       +I+LV+  F      +Y R  C  H L   S   PG   + R   + GL A+ I   P   Y T    +    +   A ECP+C
Subjt:  FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS
        L  FED E ++++P C H +H  C+D WLRSQ++CPLCR +
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS

Q9SRM0 RING-H2 finger protein ATL664.2e-2746.9Show/hide
Query:  DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGV
        DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     GL    I  LP+ L +   AE++         EC ICLG 
Subjt:  DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGV

Query:  FEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSN
        FE+GEK+K+LPPC HCYH ECVDRWL+++SSCPLCRVS  +D+S+
Subjt:  FEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSN

Arabidopsis top hitse value%identityAlignment
AT1G22500.1 RING/U-box superfamily protein1.0e-1536.17Show/hide
Query:  FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC
        F   GRT F       +I+LV+  F      +Y R  C  H L   S   PG   + R   + GL A+ I   P   Y T    +    +   A ECP+C
Subjt:  FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPIC

Query:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS
        L  FED E ++++P C H +H  C+D WLRSQ++CPLCR +
Subjt:  LGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS

AT3G10910.1 RING/U-box superfamily protein2.9e-1541.57Show/hide
Query:  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQI
        GL   A+  +P+ LY +         +   A EC ICLG FEDGEKV++LP C H +H  C+D WL S+SSCP CR S  ++  + + +
Subjt:  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQI

AT3G11110.1 RING/U-box superfamily protein3.0e-2846.9Show/hide
Query:  DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGV
        DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     GL    I  LP+ L +   AE++         EC ICLG 
Subjt:  DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGV

Query:  FEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSN
        FE+GEK+K+LPPC HCYH ECVDRWL+++SSCPLCRVS  +D+S+
Subjt:  FEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSN

AT3G16720.1 TOXICOS EN LEVADURA 22.2e-1534.07Show/hide
Query:  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVF
        + +LF V++L+ F+ LYARW      R H             F  A P   +       GL    I  LP+  +   T  KDP        EC +CL  F
Subjt:  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVF

Query:  EDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCR
        E+ E  ++LP C+H +H +C+D W  S S+CPLCR
Subjt:  EDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCR

AT5G01880.1 RING/U-box superfamily protein1.2e-1656.92Show/hide
Query:  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS
        L K P AE     V  AA EC ICLG F DGE+V++LPPC H +H  C+D WL S SSCP CR S
Subjt:  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGCCGTCATCCTTCTTGTAACTTTTATCTTCCTTTACGCCCGATG
GGTCTGCCGATTCCATCAACTCACCACCTTCTCCGCCGCTGTCCCCGGCGGCCGGTCGCCGAGGTCGCCGCCGCAGCTGGGGCTCGCCGCAACGGCGATTAACTGCCTTC
CGATCACTCTATACAAGACACCAACGGCGGAGAAGGATCCACGCGCTGTGGCCGCCGCTGCAGGGGAGTGCCCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTG
AAGATTCTGCCGCCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGCCGTGTCTCTCCCTGTATCGATACCTC
GAACAATCTTCAAATTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGCCGTCATCCTTCTTGTAACTTTTATCTTCCTTTACGCCCGATG
GGTCTGCCGATTCCATCAACTCACCACCTTCTCCGCCGCTGTCCCCGGCGGCCGGTCGCCGAGGTCGCCGCCGCAGCTGGGGCTCGCCGCAACGGCGATTAACTGCCTTC
CGATCACTCTATACAAGACACCAACGGCGGAGAAGGATCCACGCGCTGTGGCCGCCGCTGCAGGGGAGTGCCCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTG
AAGATTCTGCCGCCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGCCGTGTCTCTCCCTGTATCGATACCTC
GAACAATCTTCAAATTGTTTGA
Protein sequenceShow/hide protein sequence
MKLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKV
KILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV