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Lsi04G011210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChlororespiratory reduction 3, putative isoform 2
Genome locationchr04:14637519..14640311
RNA-Seq ExpressionLsi04G011210
SyntenyLsi04G011210
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domainsIPR038931 - Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600832.1 putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4264.1Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        MKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

XP_022942899.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]1.1e-4264.1Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        MKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

XP_022985001.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita maxima]4.3e-4263.52Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI +NNP+LR   RRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYE
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE

Query:  GPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        G LMKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  GPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

XP_023511915.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo]1.3e-4365.38Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        MKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

XP_038893324.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida]2.5e-4264.1Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MA F  IS++KNV LASLNP DD HSPP KTNGAAETI INNPRLRRRLPKPRRPSVIEIERAIGGG       RDLEEDRKAAFDMFLMSFTGKYEGP+
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        MKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

TrEMBL top hitse value%identityAlignment
A0A1S3CM65 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X11.9e-3557.5Show/hide
Query:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKY
        MA    IS++KNVALASLNPN       HSPPLKTN AA+TI I  PRLR +L  PRRPSVIEIERAIGGG       RDLEED+KAAFDMFLMSFTGKY
Subjt:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKY

Query:  EGPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        EGPLMKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  EGPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

A0A1S3CMK8 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X22.5e-3569.35Show/hide
Query:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKY
        MA    IS++KNVALASLNPN       HSPPLKTN AA+TI I  PRLR +L  PRRPSVIEIERAIGGG       RDLEED+KAAFDMFLMSFTGKY
Subjt:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKY

Query:  EGPLMKKLRETGEWAQILFALKFE
        EGPLMKKLRETGEW       KF+
Subjt:  EGPLMKKLRETGEWAQILFALKFE

A0A5A7THC9 Putative NAD(P)H dehydrogenase subunit CRR31.6e-3465.65Show/hide
Query:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--------------RDLEEDRKAAFDMFL
        MA    IS++KNVALASLNPN       HSPPLKTN AA+TI I  PRLR +L  PRRPSVIEIERAIGGG              RDLEED+KAAFDMFL
Subjt:  MACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--------------RDLEEDRKAAFDMFL

Query:  MSFTGKYEGPLMKKLRETGEWAQILFALKFE
        MSFTGKYEGPLMKKLRETGEW       KF+
Subjt:  MSFTGKYEGPLMKKLRETGEWAQILFALKFE

A0A6J1FSN9 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic5.5e-4364.1Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        MKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  MKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

A0A6J1J6W0 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic2.1e-4263.52Show/hide
Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI +NNP+LR   RRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYE
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE

Query:  GPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP
        G LMKKLRETGEW       KF+        F+F  +      ++ ++ G   L   TP
Subjt:  GPLMKKLRETGEWAQILFALKFEN------CFSFSHLAKEMVSAVYISMGSSNLGIVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01590.1 chlororespiratory reduction 37.7e-0536.71Show/hide
Query:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGE
        PLK    ++ +   N + R       +PS+ +IERA G G  RD   E D    FD  L+    K+E  + KKLRE GE
Subjt:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGCTTCCTCTGCATTTCTGTATCCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACGACTGTCACTCTCCTCCTCTCAAAACCAATGGCGCCGCCGAGAC
CATTCAGATCAACAATCCACGGCTACGGCGGCGGCTTCCGAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTGCTATTGGTGGCGGAAGGGATTTGGAAGAAGATA
GGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGAAAATATGAAGGACCACTCATGAAAAAGCTTCGTGAGACTGGGGAATGGGCACAAATCTTATTTGCTTTG
AAATTTGAAAACTGCTTCTCGTTCTCCCATTTAGCCAAGGAAATGGTTTCTGCTGTTTACATTTCAATGGGTTCTTCCAATTTGGGCATTGTCACTCCTTGTGGCTTCTG
GGCTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGCTTCCTCTGCATTTCTGTATCCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACGACTGTCACTCTCCTCCTCTCAAAACCAATGGCGCCGCCGAGAC
CATTCAGATCAACAATCCACGGCTACGGCGGCGGCTTCCGAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTGCTATTGGTGGCGGAAGGGATTTGGAAGAAGATA
GGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGAAAATATGAAGGACCACTCATGAAAAAGCTTCGTGAGACTGGGGAATGGGCACAAATCTTATTTGCTTTG
AAATTTGAAAACTGCTTCTCGTTCTCCCATTTAGCCAAGGAAATGGTTTCTGCTGTTTACATTTCAATGGGTTCTTCCAATTTGGGCATTGTCACTCCTTGTGGCTTCTG
GGCTCATTAA
Protein sequenceShow/hide protein sequence
MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGGRDLEEDRKAAFDMFLMSFTGKYEGPLMKKLRETGEWAQILFAL
KFENCFSFSHLAKEMVSAVYISMGSSNLGIVTPCGFWAH