; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G011230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011230
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein Ycf2-like
Genome locationchr04:14695563..14732443
RNA-Seq ExpressionLsi04G011230
SyntenyLsi04G011230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042334.1 hypothetical protein E6C27_scaffold795G00310 [Cucumis melo var. makuwa]9.6e-1034.09Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        L +N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+KDL SLK     +    NE 
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E Q  +E ++  K
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK

KAA0065388.1 protein Ycf2-like [Cucumis melo var. makuwa]9.6e-1036.36Show/hide
Query:  QNLFYRIYFTIVPLNLSDFELRSSYYQYFVNE-PLDVIEERWIYKKTIN-LDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        +N F    FT++P   ++ EL S  +Q+F+N+ P +V +ER    +  N   D+E+++N+++      K SLR ++++V+KDL SLK    T+    NE 
Subjt:  QNLFYRIYFTIVPLNLSDFELRSSYYQYFVNE-PLDVIEERWIYKKTIN-LDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ ++ EEE+E+E Q  +E ++  K
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK

TYK14894.1 hypothetical protein E5676_scaffold1779G00060 [Cucumis melo var. makuwa]1.6e-0934.68Show/hide
Query:  NLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGL
        N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+KDL SLK    T+    NE L L
Subjt:  NLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGL

Query:  LSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK
        L++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E Q  +E ++  K
Subjt:  LSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK

TYK28870.1 protein Ycf2-like [Cucumis melo var. makuwa]7.4e-1036.52Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNE-PLDVIEERWIYKKTIN-LDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTIN
        L +N F    FT++P   +  EL S  +Q+F+N+ P +V +ER    +  N   D+E+++N+++      K SLR ++++V+KDL SLK    T+    N
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNE-PLDVIEERWIYKKTIN-LDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTIN

Query:  EALGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK
        E L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ ++ EEE+E+E Q  +E ++  K
Subjt:  EALGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK

XP_038896481.1 uncharacterized protein LOC120084732 [Benincasa hispida]3.5e-2048.63Show/hide
Query:  FTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGLLSSIVEI
        F +VPLN  + EL S+Y+QYF NEPL+VIEERW YK++I LDD+E   NEQ  +      S    + K+ +DL SLKEE   +SK I     L +S    
Subjt:  FTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGLLSSIVEI

Query:  INERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEV
        +NE+L  K N++KQSQ+SF+PN PP  S +  KDEMNI +LE+ +V
Subjt:  INERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEV

TrEMBL top hitse value%identityAlignment
A0A5A7SM53 Uncharacterized protein1.5e-0528.79Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        L +N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+ DL SLK    T+    NE 
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQ---------EGEKEEGQERESFFQEEEV
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E    K  Q            +E+ ++ E   + +EV
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQ---------EGEKEEGQERESFFQEEEV

Query:  GIQEQ------EEERQKEQEEEKDK------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRKT
         +++Q      E++  ++  EEK              GE E + +E   + K + E  ++  V +  +  E   + NEE +TK K+DKGK++    R  T
Subjt:  GIQEQ------EEERQKEQEEEKDK------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRKT

Query:  RDESCQPSNGRDKREGVADLQMEETRERAR
        R  S   +N  D++  V  +Q E  + + +
Subjt:  RDESCQPSNGRDKREGVADLQMEETRERAR

A0A5A7T6C2 Uncharacterized protein1.5e-0528.92Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        L +N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++  ++D+    +E+       K SLR ++++V+KDL SLK    T+    NE 
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK----------EEGQERESFFQEEE
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E Q  +E ++  K          E+ ++ E   + +E
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK----------EEGQERESFFQEEE

Query:  VGIQEQE-----EERQKEQEEEKDK-------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRK
        V  ++Q+     E++  E++ E+ +             GE E + +E   + K + E  ++  V +  +  E   + NEE +TK+K+DKGK++    R  
Subjt:  VGIQEQE-----EERQKEQEEEKDK-------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRK

Query:  TRDESCQPSNG-RDKREGVADLQMEETRERAR
        TR  S   +N  + K + V  +Q E  + + +
Subjt:  TRDESCQPSNG-RDKREGVADLQMEETRERAR

A0A5A7VKZ2 Uncharacterized protein1.7e-0429.74Show/hide
Query:  NLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGL
        N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+KDL SLK    T+    NE L L
Subjt:  NLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEALGL

Query:  LSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKE------VTEEEVEKEGQEGKEHQEGEKEEGQERESFFQEEEVGIQEQE
        L++I+ IINER+     ++KQSQ S++ N+ PT S + +++ MNIH L++ E        EEE+E +    ++     + E +  E   +E+++    +E
Subjt:  LSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKE------VTEEEVEKEGQEGKEHQEGEKEEGQERESFFQEEEVGIQEQE

Query:  EERQKEQEEEKDKGEEERERDELNE-NLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL
               E E+   E E +  EL E +LK +++ + I          E   + NEE + K K+DKGK++
Subjt:  EERQKEQEEEKDKGEEERERDELNE-NLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL

A0A5D3B9P7 Uncharacterized protein4.5e-0530.94Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        L +N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+KDL SLK    T+    NE 
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEKE-----EGQERESFFQEEEVGIQE
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E Q  +E ++  K         + ++   EEE+  QE
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEKE-----EGQERESFFQEEEVGIQE

Query:  QEEERQKEQEEEKDK-GEEERERDELNENLKSIDEFVNINKVGEYSQEV-ETTKEGNEEKKTKKK
           E Q    E +DK  E++ E  ++NE    + +  +   +GE  ++  E   +G E  +T  K
Subjt:  QEEERQKEQEEEKDK-GEEERERDELNENLKSIDEFVNINKVGEYSQEV-ETTKEGNEEKKTKKK

A0A5D3CVR6 Uncharacterized protein2.6e-0529.31Show/hide
Query:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA
        L +N F    FT++P   +  EL S  +Q+F+N+  + +E+    +++   +D+    +E+       K SLR ++++V+KDL SLK    T+    NE 
Subjt:  LGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTINEA

Query:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK----------EEGQERESFFQEEE
        L LL++I+ IINER+      +KQSQ S++ N+ PT S + +++ MNIH L++ E+ EEE+E+E Q  +E ++  K          E+ ++ E   + +E
Subjt:  LGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEK----------EEGQERESFFQEEE

Query:  VGIQEQ------EEERQKEQEEEKDK------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRK
        V  ++Q      E++  ++  EEK              GE E + +E   + K + E  ++  V +  +  E   + NEE +TK K+DKGK++    R  
Subjt:  VGIQEQ------EEERQKEQEEEKDK------------GEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKL---GRRK

Query:  TRDESCQPSNGRDKREGVADLQMEETRERAR
        TR  S   +N  D++  V  +Q E  + + +
Subjt:  TRDESCQPSNGRDKREGVADLQMEETRERAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGTTTGGTCGTACTAGTAAGTTTAGTTCCCAAACTTGGCCAAAATCTCTTCTATCGTATTTATTTTACTATTGTCCCTTTGAATCTATCAGATTTCGAATTACG
TTCAAGTTACTACCAATATTTTGTGAATGAGCCATTGGACGTAATTGAAGAAAGATGGATATATAAAAAGACAATAAACTTGGATGATGATGAAAAAAGCTTGAATGAAC
AATCAAGGGAGAGATCAATGAAAAAAGTCTCTCTTAGAGTGAAAATGAGAAAAGTACAAAAAGATTTGACTTCTTTGAAGGAGGAAATAACTACACTGTCAAAAACTATA
AATGAAGCATTGGGATTGCTAAGCTCCATTGTTGAAATTATCAATGAAAGATTACTTCTAAAGAACAACTTGGACAAACAATCTCAAGAATCATTCTATCCCAATAATCC
TCCTACAAAAAGTTTTGAAATAATTAAAGATGAGATGAATATACATCGCTTAGAAGAGAAAGAGGTTACTGAAGAAGAAGTTGAAAAAGAAGGACAAGAAGGGAAAGAAC
ACCAAGAAGGAGAAAAAGAAGAAGGACAAGAACGAGAAAGTTTTTTTCAAGAAGAAGAAGTAGGAATACAAGAACAAGAAGAAGAACGACAAAAGGAACAAGAAGAAGAA
AAAGATAAGGGAGAAGAAGAACGAGAACGAGATGAATTGAATGAAAATTTGAAATCAATTGATGAATTTGTCAACATTAACAAGGTTGGAGAATATTCCCAAGAAGTAGA
AACAACAAAAGAAGGAAATGAAGAGAAAAAGACAAAGAAAAAACATGACAAAGGCAAAAAACTGGGACGACGGAAGACGAGAGACGAGAGTTGTCAGCCTTCAAATGGAA
GAGACAAAAGAGAGGGAGTTGCCGACCTTCAGATGGAAGAGACGAGAGAGAGGGCTCGAGTAGTCGAGGACGATGACAATAGTGTGAGCACGGGCAGAGGGTGGCGGCGA
ATGACATGCACGGATTTTATATTGTTAGATGGTGATGGTGAACTTTCCAATGCAGCATTGGAAGTTTCAAAAAATATGGAAGACGTGTATTTTAAGTTTAAAGAGTTCAT
TAAGAACGAGAAACCTAGATCTTACCTCATCATCACGAGATGTAGAAGACAAGACTTGGCATCGTATCTAACCGTTACAAGTAGAGGAAAGAAGAAAAATACAAGTGGAG
GGGAAGAACAGGGAAAGAAAACGGTTGGAGGCCGAATGGATTCCCCTAACCCTAAAAATGTAAAGAATATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTGTTTGGTCGTACTAGTAAGTTTAGTTCCCAAACTTGGCCAAAATCTCTTCTATCGTATTTATTTTACTATTGTCCCTTTGAATCTATCAGATTTCGAATTACG
TTCAAGTTACTACCAATATTTTGTGAATGAGCCATTGGACGTAATTGAAGAAAGATGGATATATAAAAAGACAATAAACTTGGATGATGATGAAAAAAGCTTGAATGAAC
AATCAAGGGAGAGATCAATGAAAAAAGTCTCTCTTAGAGTGAAAATGAGAAAAGTACAAAAAGATTTGACTTCTTTGAAGGAGGAAATAACTACACTGTCAAAAACTATA
AATGAAGCATTGGGATTGCTAAGCTCCATTGTTGAAATTATCAATGAAAGATTACTTCTAAAGAACAACTTGGACAAACAATCTCAAGAATCATTCTATCCCAATAATCC
TCCTACAAAAAGTTTTGAAATAATTAAAGATGAGATGAATATACATCGCTTAGAAGAGAAAGAGGTTACTGAAGAAGAAGTTGAAAAAGAAGGACAAGAAGGGAAAGAAC
ACCAAGAAGGAGAAAAAGAAGAAGGACAAGAACGAGAAAGTTTTTTTCAAGAAGAAGAAGTAGGAATACAAGAACAAGAAGAAGAACGACAAAAGGAACAAGAAGAAGAA
AAAGATAAGGGAGAAGAAGAACGAGAACGAGATGAATTGAATGAAAATTTGAAATCAATTGATGAATTTGTCAACATTAACAAGGTTGGAGAATATTCCCAAGAAGTAGA
AACAACAAAAGAAGGAAATGAAGAGAAAAAGACAAAGAAAAAACATGACAAAGGCAAAAAACTGGGACGACGGAAGACGAGAGACGAGAGTTGTCAGCCTTCAAATGGAA
GAGACAAAAGAGAGGGAGTTGCCGACCTTCAGATGGAAGAGACGAGAGAGAGGGCTCGAGTAGTCGAGGACGATGACAATAGTGTGAGCACGGGCAGAGGGTGGCGGCGA
ATGACATGCACGGATTTTATATTGTTAGATGGTGATGGTGAACTTTCCAATGCAGCATTGGAAGTTTCAAAAAATATGGAAGACGTGTATTTTAAGTTTAAAGAGTTCAT
TAAGAACGAGAAACCTAGATCTTACCTCATCATCACGAGATGTAGAAGACAAGACTTGGCATCGTATCTAACCGTTACAAGTAGAGGAAAGAAGAAAAATACAAGTGGAG
GGGAAGAACAGGGAAAGAAAACGGTTGGAGGCCGAATGGATTCCCCTAACCCTAAAAATGTAAAGAATATATAG
Protein sequenceShow/hide protein sequence
MNCLVVLVSLVPKLGQNLFYRIYFTIVPLNLSDFELRSSYYQYFVNEPLDVIEERWIYKKTINLDDDEKSLNEQSRERSMKKVSLRVKMRKVQKDLTSLKEEITTLSKTI
NEALGLLSSIVEIINERLLLKNNLDKQSQESFYPNNPPTKSFEIIKDEMNIHRLEEKEVTEEEVEKEGQEGKEHQEGEKEEGQERESFFQEEEVGIQEQEEERQKEQEEE
KDKGEEERERDELNENLKSIDEFVNINKVGEYSQEVETTKEGNEEKKTKKKHDKGKKLGRRKTRDESCQPSNGRDKREGVADLQMEETRERARVVEDDDNSVSTGRGWRR
MTCTDFILLDGDGELSNAALEVSKNMEDVYFKFKEFIKNEKPRSYLIITRCRRQDLASYLTVTSRGKKKNTSGGEEQGKKTVGGRMDSPNPKNVKNI