; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G011240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr04:14747613..14755337
RNA-Seq ExpressionLsi04G011240
SyntenyLsi04G011240
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]6.9e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPS+D Q VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]6.9e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPS+D Q VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]9.0e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPS+DNQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

XP_022989005.1 uncharacterized protein LOC111486195 [Cucurbita maxima]6.9e-4795.15Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIYEPPS++NQ+VSDK KVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

XP_038891417.1 30S ribosomal protein S17-like [Benincasa hispida]4.8e-4897.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRV+LDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSK SAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        ST+
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic4.4e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPS+DNQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic4.4e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPS+DNQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic4.4e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPS+DNQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic7.4e-4794.17Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIY+PPS++NQ+VSDK KVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic3.3e-4795.15Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIYEPPS++NQ+VSDK KVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S173.4e-2052.81Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQI
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++ E P  +  I
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQI

B1I1J7 30S ribosomal protein S176.8e-2164Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S171.4e-1854.79Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S171.1e-1852.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S171.1e-1858.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein1.7e-3570.59Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+KHW+VAEI++KARIY P +    + +  S  SA 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

Query:  ST
        +T
Subjt:  ST

AT1G79850.1 ribosomal protein S177.2e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein1.4e-3470Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHKHW+V+EI++KARIY P +    + S  S    P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.6e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAGCATTGGGTGGTCGCTGAAA
TTTTGAGGAAAGCACGGATTTACGAGCCACCATCAAAAGATAACCAGATTGTTTCAGACAAAAGCAAAGTTTCAGCTCCTTCAACCACCTAA
mRNA sequenceShow/hide mRNA sequence
ACAAAGTTGAGGGTTATTTTCTATAATTAAGTTTTTGCCTAAACCCTATTTCACGTTCAGGCACCTCCGCCCTCCCATTACCAGCTACGGTACTCAGCCCCGCCGCACGC
CGTTCCTGTCCAGATAGTTTCTGACTCCTCGAATTTGTAGCAGCTTCGAGCTTAAAAGGGTTGTTAGGGTTTTTTGGGGGGTTTTTCGATCGGAGGGCCAAGATGAAGCA
GGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGT
TCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAGCATTGGGTGGTCGCTGAAATTTTGAGG
AAAGCACGGATTTACGAGCCACCATCAAAAGATAACCAGATTGTTTCAGACAAAAGCAAAGTTTCAGCTCCTTCAACCACCTAAGGATAAACTACTGCAAAACATCGAGA
CGAGTCAGATCGAAAAGTTCGCAATGCACTGGAAACGAAGAACGGAAACTCTGGAAAATGAACTTCTGTAAGCAGTATGTTCTCATGTCAAAGATTTGTAGTTACATTAC
CATTACGTTTTCTACTGTTGTGTGAACCTTCTTTTTCCTATGAGCATTTATCTCCACGATTTGTTGTGAGGTTGTAAAATTGCATAATAACATATTAAAAAAGGTTCCAT
CAACCCGTAGGTTATATCTCTGGGCTGAACTCAGAAGAGTTTTT
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKVSAPSTT