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Lsi04G011310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr04:15219198..15219467
RNA-Seq ExpressionLsi04G011310
SyntenyLsi04G011310
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039086.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-1568.29Show/hide
Query:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRR-EQPRARGVERRGGRRG
        M  RGDRE+ENE E   PA+WQAIA+I NRL++HFERTNRDIQE+Q+SMAQMNAN RGA PQNRR +QPR       GGR G
Subjt:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRR-EQPRARGVERRGGRRG
KAA0056127.1 uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa]3.6e-2068.89Show/hide
Query:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRRE-QPRARGVERRGGRRGGRQHAGGR
        MA RG RE+ENE   D PA+WQA AEI NRL++HF++TNRDIQE+Q+S+ QMN NLRG  PQN  E QP+ RGVERRGGRRGGRQ+AG R
Subjt:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRRE-QPRARGVERRGGRRGGRQHAGGR
TrEMBL top hitse value%identityAlignment
A0A5A7TAL8 Transposon Ty3-G Gag-Pol polyprotein5.9e-1668.29Show/hide
Query:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRR-EQPRARGVERRGGRRG
        M  RGDRE+ENE E   PA+WQAIA+I NRL++HFERTNRDIQE+Q+SMAQMNAN RGA PQNRR +QPR       GGR G
Subjt:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRR-EQPRARGVERRGGRRG
A0A5A7UNE4 Uncharacterized protein1.8e-2068.89Show/hide
Query:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRRE-QPRARGVERRGGRRGGRQHAGGR
        MA RG RE+ENE   D PA+WQA AEI NRL++HF++TNRDIQE+Q+S+ QMN NLRG  PQN  E QP+ RGVERRGGRRGGRQ+AG R
Subjt:  MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRRE-QPRARGVERRGGRRGGRQHAGGR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTAGAGGTGATAGAGAAAGAGAGAATGAGGGAGAGAGAGATTTTCCAGCTGTGTGGCAAGCCATAGCTGAAATCAGAAATCGACTCAATCAACATTTCGAGCG
AACTAATCGAGACATCCAGGAAATGCAGCAAAGCATGGCCCAAATGAATGCCAATCTTAGAGGTGCGCACCCACAAAATCGTCGCGAACAGCCGCGCGCTCGAGGGGTTG
AACGCAGAGGTGGTCGGCGTGGGGGTAGACAACATGCTGGAGGTAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTAGAGGTGATAGAGAAAGAGAGAATGAGGGAGAGAGAGATTTTCCAGCTGTGTGGCAAGCCATAGCTGAAATCAGAAATCGACTCAATCAACATTTCGAGCG
AACTAATCGAGACATCCAGGAAATGCAGCAAAGCATGGCCCAAATGAATGCCAATCTTAGAGGTGCGCACCCACAAAATCGTCGCGAACAGCCGCGCGCTCGAGGGGTTG
AACGCAGAGGTGGTCGGCGTGGGGGTAGACAACATGCTGGAGGTAGGTAA
Protein sequenceShow/hide protein sequence
MATRGDRERENEGERDFPAVWQAIAEIRNRLNQHFERTNRDIQEMQQSMAQMNANLRGAHPQNRREQPRARGVERRGGRRGGRQHAGGR