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Lsi04G011350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent DNA helicase
Genome locationchr04:15474792..15475176
RNA-Seq ExpressionLsi04G011350
SyntenyLsi04G011350
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0000166 - nucleotide binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR010285 - DNA helicase Pif1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5531013.1 hypothetical protein RHGRI_025837 [Rhododendron griersonianum]1.6e-1170Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK
        L T+RSNGMIAL TATSGVAASILP GRT HSRFKI +  +D ++CNI KQS T  LIR+
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK

KAG5563862.1 hypothetical protein RHGRI_000157 [Rhododendron griersonianum]1.6e-1170Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK
        L T+RSNGMIAL TATSGVAASILP GRT HSRFKI +  +D ++CNI KQS T  LIR+
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK

KAG5565447.1 hypothetical protein RHGRI_001363 [Rhododendron griersonianum]1.6e-1170Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK
        L T+RSNGMIAL TATSGVAASILP GRT HSRFKI +  +D ++CNI KQS T  LIR+
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK

XP_008465451.1 PREDICTED: ATP-dependent DNA helicase PIF4-like, partial [Cucumis melo]4.7e-1143.9Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRKRYNGLYLTIWRKS---------------------------
        L T+RS GMIAL TATSGVAASIL  GRT HSRF I L+A++ +MCNI KQS    LIRK      L IW ++                           
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRKRYNGLYLTIWRKS---------------------------

Query:  -IRIWWRFSSKCFQYFQKEQDNK
         + ++     KCF+ F KEQDNK
Subjt:  -IRIWWRFSSKCFQYFQKEQDNK

XP_020100028.1 uncharacterized protein LOC109718258 [Ananas comosus]1.8e-1068.33Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK
        L  VRS G+IA+ TATSGVAASI+P GRT HSRFKI L  +D TMCN+SKQS T  L+RK
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK

TrEMBL top hitse value%identityAlignment
A0A1S3CQE3 ATP-dependent DNA helicase2.3e-1143.9Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRKRYNGLYLTIWRKS---------------------------
        L T+RS GMIAL TATSGVAASIL  GRT HSRF I L+A++ +MCNI KQS    LIRK      L IW ++                           
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRKRYNGLYLTIWRKS---------------------------

Query:  -IRIWWRFSSKCFQYFQKEQDNK
         + ++     KCF+ F KEQDNK
Subjt:  -IRIWWRFSSKCFQYFQKEQDNK

A0A1S3XKC7 ATP-dependent DNA helicase5.6e-1067.8Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR
        L T+RS G IAL TATSGVAASILP GRT HSRFK+ +   D   CNISKQS+ V LIR
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR

A0A6P5G2W9 ATP-dependent DNA helicase8.6e-1168.33Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK
        L  VRS G+IA+ TATSGVAASI+P GRT HSRFKI L  +D TMCN+SKQS T  L+RK
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRK

A0A6P6TWB3 ATP-dependent DNA helicase2.5e-1069.49Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR
        L  +RS G IAL TATSGVAASILP GRT HSRFKI LQ SD  +CNI KQS    LIR
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR

A0A6P6V978 ATP-dependent DNA helicase2.5e-1069.49Show/hide
Query:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR
        L  +RS G IAL TATSGVAASILP GRT HSRFKI LQ SD  +CNI KQS    LIR
Subjt:  LTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTTCGATTTGACAACAGTTAGATCAAATGGAATGATAGCTTTAACAACTGCAACATCTGGTGTGGCGGCATCAATTTTACCAAGAGGTCGAACAACACATTCTAGATT
CAAAATTTTGTTACAGGCTTCCGATTTGACAATGTGTAATATATCAAAACAGAGTGTCACGGTAGTGCTAATTCGAAAAAGATATAATGGATTGTACTTAACCATTTGGA
GGAAAAGTATTCGTATTTGGTGGAGATTTTCGTCAAAGTGCTTCCAGTACTTCCAAAAGGAACAAGACAACAAATTGTTGCTATTAGCTTGA
mRNA sequenceShow/hide mRNA sequence
GCTTTCGATTTGACAACAGTTAGATCAAATGGAATGATAGCTTTAACAACTGCAACATCTGGTGTGGCGGCATCAATTTTACCAAGAGGTCGAACAACACATTCTAGATT
CAAAATTTTGTTACAGGCTTCCGATTTGACAATGTGTAATATATCAAAACAGAGTGTCACGGTAGTGCTAATTCGAAAAAGATATAATGGATTGTACTTAACCATTTGGA
GGAAAAGTATTCGTATTTGGTGGAGATTTTCGTCAAAGTGCTTCCAGTACTTCCAAAAGGAACAAGACAACAAATTGTTGCTATTAGCTTGA
Protein sequenceShow/hide protein sequence
AFDLTTVRSNGMIALTTATSGVAASILPRGRTTHSRFKILLQASDLTMCNISKQSVTVVLIRKRYNGLYLTIWRKSIRIWWRFSSKCFQYFQKEQDNKLLLLA