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Lsi04G011360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent DNA helicase
Genome locationchr04:15475227..15475861
RNA-Seq ExpressionLsi04G011360
SyntenyLsi04G011360
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0000166 - nucleotide binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR010285 - DNA helicase Pif1-like
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020255701.1 ATP-dependent DNA helicase PIF6-like [Asparagus officinalis]2.8e-3062.71Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWKEHH------TCRSSNG----------SP-NDEGYPFKL
        FDEA+DDTN YYQE+FLN+L+PN + PHKLILK NCPIMLLRNLD SNG+CNGTRMICR + EH+      T    +G          SP  +EGYPF+ 
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWKEHH------TCRSSNG----------SP-NDEGYPFKL

Query:  KKKQFPIRLCFAMMINKA
        ++KQFPIRLCFAM INKA
Subjt:  KKKQFPIRLCFAMMINKA

XP_020271152.1 uncharacterized protein LOC109846337 [Asparagus officinalis]7.5e-3160.68Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWK-----------EHHT-----CRSSNGSPNDEGYPFKLK
        FDEA+DDTN YYQE+FLN+L+PN +LPHKLILK NCPIMLLRNLD SNG+CNGTRMICR ++           +H +      R       +EGYPF+ +
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWK-----------EHHT-----CRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

XP_022152307.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]8.8e-3262.39Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSLLPN I PHKL+LKANCP++LLRNLD +NGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

XP_022158321.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]7.5e-3161.54Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSLLPN I PHKL+LKANCP++LLRNLD +NGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLC AM INKA
Subjt:  KKQFPIRLCFAMMINKA

XP_022159149.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]5.2e-3263.25Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT++YYQE+FLNSLLPN I PHKL+LK NCPI+LLRNLD SNGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

TrEMBL top hitse value%identityAlignment
A0A5B7A5M4 ATP-dependent DNA helicase (Fragment)1.7e-2858.12Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSL PN + PH+L+LK N PIMLLRNLD SNGLCNGTRM+CR++                K+    R       +EGYPF+ K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

A0A5B7A9C3 ATP-dependent DNA helicase1.7e-2858.12Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSL PN + PH+L+LK N PIMLLRNLD SNGLCNGTRM+CR++                K+    R       +EGYPF+ K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

A0A6J1DFU4 ATP-dependent DNA helicase4.3e-3262.39Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSLLPN I PHKL+LKANCP++LLRNLD +NGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

A0A6J1E0L4 ATP-dependent DNA helicase3.6e-3161.54Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT+ YYQE+FLNSLLPN I PHKL+LKANCP++LLRNLD +NGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLC AM INKA
Subjt:  KKQFPIRLCFAMMINKA

A0A6J1E1J0 ATP-dependent DNA helicase2.5e-3263.25Show/hide
Query:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK
        FDEA+DDT++YYQE+FLNSLLPN I PHKL+LK NCPI+LLRNLD SNGLCNGTRM+CR +                K+    R      NDEGYPFK K
Subjt:  FDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSW----------------KEHHTCRSSNGSPNDEGYPFKLK

Query:  KKQFPIRLCFAMMINKA
        +KQFPIRLCFAM INKA
Subjt:  KKQFPIRLCFAMMINKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G51690.1 PIF1 helicase2.3e-0629.41Show/hide
Query:  DFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRM----ICRSWKEHHTCRSSN-----------GSPNDEGYPFKLKKKQFPIRLCFAMMIN
        + LNS+    +   KL LK   P+MLLR+LD S G   GTR+    +C    E      +              P +  +P ++++ Q+P++L FAM I+
Subjt:  DFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRM----ICRSWKEHHTCRSSN-----------GSPNDEGYPFKLKKKQFPIRLCFAMMIN

Query:  KA
        ++
Subjt:  KA

AT3G51700.1 PIF1 helicase5.7e-0531.78Show/hide
Query:  YQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRM-ICRSWKEHHTCRSSNGSPNDEG----------------YPFKLKKKQFPIRLCF
        Y  +FLNS+        KL LK   P+MLLR+L     L  GTR+ I R   E     +   + N+ G                +P K++++QFP++L F
Subjt:  YQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRM-ICRSWKEHHTCRSSNGSPNDEG----------------YPFKLKKKQFPIRLCF

Query:  AMMINKA
        AM I+++
Subjt:  AMMINKA

AT5G28780.1 PIF1 helicase1.8e-1136.7Show/hide
Query:  DTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWKEH----------HTCRSSN-----GSPNDEGYPFKLKKKQFPIR
        D  A Y   +LNSL    +  HK+ LK   PIM +RN +   GLCNGTR+I  +  E           H  +  +      SP    +PF L+++QFP+R
Subjt:  DTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWKEH----------HTCRSSN-----GSPNDEGYPFKLKKKQFPIR

Query:  LCFAMMINK
        +C+AM I K
Subjt:  LCFAMMINK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATAAGTTAAAACCTTCAATAGTTTTTGATGAGGCAATGGACGATACAAATGCTTACTACCAAGAAGACTTTCTAAATTCTTTATTACCAAATAGAATACTACC
GCATAAGCTTATACTAAAGGCTAATTGTCCTATTATGTTATTGAGAAATTTAGATTCGTCTAATGGATTGTGCAATGGAACAAGAATGATATGTCGATCATGGAAGGAAC
ATCATACATGCCGAAGTAGCAATGGTTCACCTAATGACGAAGGGTATCCATTCAAGTTAAAAAAGAAACAATTTCCTATTCGATTATGTTTTGCAATGATGATAAACAAA
GCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATAAGTTAAAACCTTCAATAGTTTTTGATGAGGCAATGGACGATACAAATGCTTACTACCAAGAAGACTTTCTAAATTCTTTATTACCAAATAGAATACTACC
GCATAAGCTTATACTAAAGGCTAATTGTCCTATTATGTTATTGAGAAATTTAGATTCGTCTAATGGATTGTGCAATGGAACAAGAATGATATGTCGATCATGGAAGGAAC
ATCATACATGCCGAAGTAGCAATGGTTCACCTAATGACGAAGGGTATCCATTCAAGTTAAAAAAGAAACAATTTCCTATTCGATTATGTTTTGCAATGATGATAAACAAA
GCATAG
Protein sequenceShow/hide protein sequence
MRDKLKPSIVFDEAMDDTNAYYQEDFLNSLLPNRILPHKLILKANCPIMLLRNLDSSNGLCNGTRMICRSWKEHHTCRSSNGSPNDEGYPFKLKKKQFPIRLCFAMMINK
A