CuGenDBv2

Gene ID	Lsi04G011450
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome b6-f complex subunit 4
Genome location	chr04:15854779..15858670
RNA-Seq Expression	Lsi04G011450
Synteny	Lsi04G011450
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function)
InterPro domains	IPR036150 - Cytochrome b/b6, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ARC99855.1 cytochrome b6/f complex subunit IV [Petrophytum caespitosum]

3.0e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

QCW94683.1 cytochrome b6f subunit IV [Larrea tridentata]

3.0e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

QVD39989.1 PetD [Maerua crassifolia]

3.0e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

YP_009869983.1 cytochrome b6/f complex subunit IV [Mesua ferrea]

3.0e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

YP_009924097.1 cytochrome b6/f complex subunit IV [Danthonia spicata]

3.0e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

TrEMBL top hits

e value

%identity

Alignment

A0A1V0ITT2 Cytochrome b6-f complex subunit 4

1.4e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

A0A240F5F9 Cytochrome b6-f complex subunit 4

1.4e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

A0A2L1IP37 Cytochrome b6-f complex subunit 4

1.4e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

A0A6M4RH28 Cytochrome b6-f complex subunit 4

1.4e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

A0A6M8U4Y7 Cytochrome b6-f complex subunit 4

1.4e-17

94.12

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Query:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        I+PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  ILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

SwissProt top hits

e value

%identity

Alignment

A1E9V5 Cytochrome b6-f complex subunit 4

1.5e-19

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

P12361 Cytochrome b6-f complex subunit 4

1.5e-19

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Q14FC6 Cytochrome b6-f complex subunit 4

1.5e-19

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Q49KW7 Cytochrome b6-f complex subunit 4

1.5e-19

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Q9MTJ4 Cytochrome b6-f complex subunit 4

1.5e-19

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGTVVALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00730.1 photosynthetic electron transfer D

8.9e-20

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Query:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF
        +PFLENVNKFQNPFRRPVATTVF+IGT  ALWLGIGATLPIDK LTLGLF
Subjt:  LPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Sequences

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CDS sequence

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ATGAGACGGGTGCAATTATACTCTAATGATCAGGACCCAACAAAGAGAGAAGAAAGTCCTTGTAGCTGCCTGAAGTCTCAGAATGAACTGCTTTGTTCAGTGTTTTCTTA
TACTTCTTGTGGTATTCTGCCTTTATATACTGCATATCTATCTCAGCTCTTGACACAATTACTCTTATCAGCGTCGAGTCATCTGTTCCCATTCCCTTCATCGCCTTTCG
CATTCCCAATCTCTTCTCTCCAGCTTTATAGAGAGATTTGGCATCTTTCTCTACCAGAGCTCTGTCCACTTCTGGACCTTCATAGCGCGGACCTTTTGATGATCACCAGT
CGCAGTGCGTTCAATATCACGTTCAAGGGGAGAACGAAACATGGTCAACAGTATCACATCCAAAACCTGCAAAAAAGAAACAAACAAAATCAATACCAAAACAAAATTAT
CACTCAGCATAATCCCATTTCAATTTTACCGTTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTGTGATTGGTACCGTAG
TAGCCCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATGCCTAACTTTAGGTCTTTTTTAA

mRNA sequence

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Protein sequence

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MRRVQLYSNDQDPTKREESPCSCLKSQNELLCSVFSYTSCGILPLYTAYLSQLLTQLLLSASSHLFPFPSSPFAFPISSLQLYREIWHLSLPELCPLLDLHSADLLMITS
RSAFNITFKGRTKHGQQYHIQNLQKRNKQNQYQNKIITQHNPISILPFLENVNKFQNPFRRPVATTVFVIGTVVALWLGIGATLPIDKCLTLGLF

Lsi04G011450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome