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Lsi04G011650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhomeobox-leucine zipper protein HOX3-like
Genome locationchr04:16901349..16907446
RNA-Seq ExpressionLsi04G011650
SyntenyLsi04G011650
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR003106 - Leucine zipper, homeobox-associated
IPR009057 - Homeobox-like domain superfamily
IPR017970 - Homeobox, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599884.1 Homeobox-leucine zipper protein HOX3, partial [Cucurbita argyrosperma subsp. sororia]3.5e-4997.17Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

XP_022150060.1 homeobox-leucine zipper protein HOX3-like [Momordica charantia]7.7e-4997.17Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE LAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTTALD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

XP_022942450.1 homeobox-leucine zipper protein HOX3-like [Cucurbita moschata]3.5e-4997.17Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

XP_022976582.1 homeobox-leucine zipper protein HOX3-like [Cucurbita maxima]1.0e-4896.23Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE+LAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

XP_038893065.1 homeobox-leucine zipper protein HOX3-like [Benincasa hispida]5.4e-5099.06Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

TrEMBL top hitse value%identityAlignment
A0A0A0KJE2 Homeobox domain-containing protein1.4e-4896.23Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+LKLKPRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHS EPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

A0A1S3BYV1 homeobox-leucine zipper protein HOX3-like5.4e-4895.28Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+L LKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPL ASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRI+V
Subjt:  KTRIVV

A0A6J1D7F8 homeobox-leucine zipper protein HOX3-like3.7e-4997.17Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE LAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTTALD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

A0A6J1FWC2 homeobox-leucine zipper protein HOX3-like1.7e-4997.17Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKETLAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

A0A6J1IG52 homeobox-leucine zipper protein HOX3-like4.9e-4996.23Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE+LAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT LD
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIVV
        KTRIVV
Subjt:  KTRIVV

SwissProt top hitse value%identityAlignment
P46665 Homeobox-leucine zipper protein HAT142.1e-2563.27Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA
        KQK  LA+ L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV+ELR +K + P  +       LPA+ LTMCP CERV T+A
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA

Q0JKX1 Homeobox-leucine zipper protein HOX36.4e-3882.11Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT
        KQKE LA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ+EVEELRAM+VAPPTV+SPH+ +PLPAS LTMCPRCER+T
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT

Q8GXM7 Homeobox-leucine zipper protein ATHB-X2.5e-2669.47Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT
        KQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ EVEELRA+K             P   S LTMCPRCERVT
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT

Q8S9N6 Homeobox-leucine zipper protein ATHB-178.9e-3270.48Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEELRAMKV P TV S        AS+LTMCPRCERVT  A  
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIV
           +V
Subjt:  KTRIV

Q9XH38 Homeobox-leucine zipper protein HOX36.4e-3882.11Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT
        KQKE LA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ+EVEELRAM+VAPPTV+SPH+ +PLPAS LTMCPRCER+T
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT

Arabidopsis top hitse value%identityAlignment
AT1G70920.1 homeobox-leucine zipper protein 181.8e-2769.47Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT
        KQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ EVEELRA+K             P   S LTMCPRCERVT
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT

AT2G01430.1 homeobox-leucine zipper protein 176.3e-3370.48Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEELRAMKV P TV S        AS+LTMCPRCERVT  A  
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KTRIV
           +V
Subjt:  KTRIV

AT2G44910.1 homeobox-leucine zipper protein 41.8e-2458.82Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD
        KQK  LA+ L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV ELRA+K++P   +        P + LTMCP CERV+++A  
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALD

Query:  KT
         T
Subjt:  KT

AT4G37790.1 Homeobox-leucine zipper protein family3.2e-2452.78Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERV------
        KQK+ LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+    LT++N+RLQKE+++L+A+K++ P  +       +PA+ LTMCP CER+      
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERV------

Query:  -TTTALDK
          TTA+D+
Subjt:  -TTTALDK

AT5G06710.1 homeobox from Arabidopsis thaliana1.5e-2663.27Show/hide
Query:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA
        KQK  LA+ L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV+ELR +K + P  +       LPA+ LTMCP CERV T+A
Subjt:  KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAACAGAAGGAGACTTTGGCAGAAATGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAATTAAAGCAAACGGAGAT
GGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGA
TTTCACCGCACAGCTGTGAGCCGTTGCCGGCGTCGAATCTGACAATGTGTCCACGCTGTGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGGATTGTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAACAGAAGGAGACTTTGGCAGAAATGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAATTAAAGCAAACGGAGAT
GGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGA
TTTCACCGCACAGCTGTGAGCCGTTGCCGGCGTCGAATCTGACAATGTGTCCACGCTGTGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGGATTGTCGTTTAAGTT
GGTCGGCCGCTGCTCCCCCCTTATTTTCACTCATGCGGAATCATCACTCCATCTTAATCAAAATCTGCCTCATTCTCTCTTTTGTTTTAATTTTAGACATATGTCCTATA
TTATTATATACATATATCATATAATTTAAAGAGGGGTGTTTGGTTTATGTCTTTCTTTGAAATTGGGTTGTGTTTATACTCTTATAAACTTTCTCCATATTTGAAATTTC
TGTTTTTAGTTTTGCTTTCCTCAATTTTTAAAATACCCAGGTGCCTCCATCATTCTTCATATATGAAAGGTTTGTTTTAGTT
Protein sequenceShow/hide protein sequence
MSKQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV