; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G011780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr04:17345897..17346280
RNA-Seq ExpressionLsi04G011780
SyntenyLsi04G011780
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PPD74578.1 hypothetical protein GOBAR_DD28493 [Gossypium barbadense]2.5e-5491.34Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEGRRFSNEEKDPMTSKELNEEPYE         SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]5.9e-5693.7Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]2.1e-6199.21Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.1e-5996.85Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]3.3e-5996.06Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
         VRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic2.8e-5693.7Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A443Q5I9 30S ribosomal protein S12, chloroplastic2.3e-5389.76Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6A5N1Q8 Uncharacterized protein5.9e-5491.34Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTL A+GVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383941.0e-6199.21Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

U5CU38 Uncharacterized protein8.6e-5388.98Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP
        +EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP

Query:  GVRYHIVRGTLDAVGVKDRQQGRSSAL
        GVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  GVRYHIVRGTLDAVGVKDRQQGRSSAL

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.2e-4395.7Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

A4QJX7 30S ribosomal protein S12-B, chloroplastic2.0e-3891.86Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic2.6e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic2.6e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic2.6e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein5.4e-2351.46Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ

Query:  GRS
        GRS
Subjt:  GRS

ATCG00065.1 ribosomal protein S12A1.2e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C1.2e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B1.2e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein5.4e-2351.46Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ

Query:  GRS
        GRS
Subjt:  GRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACC
CTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACC
CTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
Protein sequenceShow/hide protein sequence
MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
LDAVGVKDRQQGRSSAL