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Lsi04G011800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G011800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionADP-ribosylation factor GTPase-activating protein AGD4
Genome locationchr04:17394300..17399332
RNA-Seq ExpressionLsi04G011800
SyntenyLsi04G011800
Gene Ontology termsGO:0050790 - regulation of catalytic activity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005096 - GTPase activator activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027267 - AH/BAR domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038892774.1 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X3 [Benincasa hispida]4.2e-1087.8Show/hide
Query:  LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        L   DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

XP_038892775.1 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4 [Benincasa hispida]7.1e-1094.59Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

XP_038892777.1 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X6 [Benincasa hispida]4.2e-1087.8Show/hide
Query:  LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        L   DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

XP_038892778.1 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7 [Benincasa hispida]1.4e-1062.12Show/hide
Query:  GPLESFPINSSKTVEWRPI------LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        G + S P+ S     +R +      L   DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  GPLESFPINSSKTVEWRPI------LSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

XP_038892779.1 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X8 [Benincasa hispida]7.1e-1094.59Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

TrEMBL top hitse value%identityAlignment
A0A0A0KJC8 Uncharacterized protein4.5e-1094.59Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        DSRQRFDKAMHEYDQAREKFVSLKKNTRGDI+AE EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

A0A1S3BYT7 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X41.0e-0991.89Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        DSRQRFDKAMH+YDQAREKFVSLKKNTRGDI+AE EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

A0A1S4E0Y6 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X31.0e-0991.89Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        DSRQRFDKAMH+YDQAREKFVSLKKNTRGDI+AE EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

A0A6J1FP05 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X55.9e-1072Show/hide
Query:  SKTVEWRPILSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        SK   W  ++   DSRQ FDKAMHEYDQAREKFVSLKKNTRGDI+AE E+
Subjt:  SKTVEWRPILSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

A0A6J1JFI7 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X65.9e-1072Show/hide
Query:  SKTVEWRPILSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        SK   W  ++   DSRQ FDKAMHEYDQAREKFVSLKKNTRGDI+AE E+
Subjt:  SKTVEWRPILSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

SwissProt top hitse value%identityAlignment
Q5W7F2 ADP-ribosylation factor GTPase-activating protein AGD33.2e-0559.46Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        ++R+RFDKA   YDQAREKF+SL+K T+ D+ A LE+
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

Q9C6C3 ADP-ribosylation factor GTPase-activating protein AGD23.0e-1186.49Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        +SR+RFDKA+H YDQAREKFVSLKKNTRGDI+AELEE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

Q9FIT8 ADP-ribosylation factor GTPase-activating protein AGD15.5e-0559.46Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        ++R+RFDKA   YDQAREK++SL+K+TR D+ A +EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

Q9SMX5 ADP-ribosylation factor GTPase-activating protein AGD44.3e-1081.08Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        +SR RFDKA H YDQ+REKFVSLKKNTRG+I+AELEE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

Arabidopsis top hitse value%identityAlignment
AT1G10870.1 ARF-GAP domain 43.1e-1181.08Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        +SR RFDKA H YDQ+REKFVSLKKNTRG+I+AELEE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

AT1G60860.1 ARF-GAP domain 22.1e-1286.49Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        +SR+RFDKA+H YDQAREKFVSLKKNTRGDI+AELEE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

AT5G13300.1 ARF GTPase-activating protein2.3e-0659.46Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        ++R+RFDKA   YDQAREKF+SL+K T+ D+ A LE+
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE

AT5G61980.1 ARF-GAP domain 13.9e-0659.46Show/hide
Query:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE
        ++R+RFDKA   YDQAREK++SL+K+TR D+ A +EE
Subjt:  DSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTGGACCTTTGGAGTCCTTCCCTATAAATTCCTCTAAAACTGTTGAATGGAGGCCTATTCTCAGTGGGCTTGACTCTCGTCAACGCTTCGATAAAGCTATGCA
TGAGTATGATCAGGCTCGAGAAAAGTTTGTTTCATTGAAAAAGAACACACGAGGGGACATTATTGCAGAACTTGAAGAGTTACAAACGGTAACTTTTCTGGTTAATTGTT
TGTATTCAAGACTCAGTAGACAAGCTGGTCTTTGTTTAATGAAGAGATCAGAAATTATTTTCATTTTGAACATCATCTCTCCAACTTGTCTTCACCATGGTTGTTGTCAA
GAGGTGGTTGCCAGTGATAATGGCCGGAGGTCGCTGATGGTGGTAGTCCATCGGCCGAGGTCGTCGTCGGTGGTGATTGGAGGTGGTCACTGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTGGACCTTTGGAGTCCTTCCCTATAAATTCCTCTAAAACTGTTGAATGGAGGCCTATTCTCAGTGGGCTTGACTCTCGTCAACGCTTCGATAAAGCTATGCA
TGAGTATGATCAGGCTCGAGAAAAGTTTGTTTCATTGAAAAAGAACACACGAGGGGACATTATTGCAGAACTTGAAGAGTTACAAACGGTAACTTTTCTGGTTAATTGTT
TGTATTCAAGACTCAGTAGACAAGCTGGTCTTTGTTTAATGAAGAGATCAGAAATTATTTTCATTTTGAACATCATCTCTCCAACTTGTCTTCACCATGGTTGTTGTCAA
GAGGTGGTTGCCAGTGATAATGGCCGGAGGTCGCTGATGGTGGTAGTCCATCGGCCGAGGTCGTCGTCGGTGGTGATTGGAGGTGGTCACTGGAGTTAG
Protein sequenceShow/hide protein sequence
MGFGPLESFPINSSKTVEWRPILSGLDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIIAELEELQTVTFLVNCLYSRLSRQAGLCLMKRSEIIFILNIISPTCLHHGCCQ
EVVASDNGRRSLMVVVHRPRSSSVVIGGGHWS