CuGenDBv2

Gene ID	Lsi04G011990
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Glutamate receptor
Genome location	chr04:18229248..18268210
RNA-Seq Expression	Lsi04G011990
Synteny	Lsi04G011990
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]

3.8e-48

38.24

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Query:  SQPQST-----ASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKF-PTSTEGGTSE--LVSNPKF
        SQ QST     +ST   T + + +NSS     FG+ L+    + LD +N+ LW++MV  ++KG ++DG +  T+P P +F P+ T  G S+    SNP++
Subjt:  SQPQST-----ASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKF-PTSTEGGTSE--LVSNPKF

Query:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS
        E W   DQ L+GWL  SMT ++A  VM    +  +W ALE L+GA SK++ N +R+++Q T+KGS  M +YL  MK  ++SL +AG+   E+ L + +L+
Subjt:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS

Query:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAYNKQNAIGGQSSQSN--NNKNYGKMNSHRGGTERGRGRGRYSSY
        GL+++ +PIV +IE +++  W ++Y  L+++++ L  +N +S   N ++  SA+ A NK N     +  SN  N    G    +RGG   G GR R    
Subjt:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAYNKQNAIGGQSSQSN--NNKNYGKMNSHRGGTERGRGRGRYSSY

Query:  GRNSSKPTCQICGKYGHSA
          N+S+PTCQ+CGK+GHSA
Subjt:  GRNSSKPTCQICGKYGHSA

XP_022143579.1 ankyrin repeat-containing protein NPR4-like [Momordica charantia]

2.1e-59

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Query:  STASTSRVTNVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTST-EGGTSELVSNPKFEDWNTVDQALLGWLLG
        ST + S+   V    N SFGHPLST LTV LD++NY+LW+ MVLAVL GQKVDG+VL TK  P+K+ T+T + G  E   NP +E+W+ VDQA  GWL G
Subjt:  STASTSRVTNVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTST-EGGTSELVSNPKFEDWNTVDQALLGWLLG

Query:  SMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEK
        SMT SIA DV++ + S +VW ALE L+G++SKAR+NQLR+++QNTKKG+MKM  YLA+MKQTSE LKLAGE VT SYL+SC+L+G EA+ LPI+C IE+K
Subjt:  SMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEK

XP_022157748.1 uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]

3.5e-86

56.21

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Query:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF
        M  E   +    PQ   + +  T N +   N+SFGHPL TVLTV LD++NYSLWR MVLAVL+GQK DG+VLGT  KP +F  S  TEG +  L  NP++
Subjt:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF

Query:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS
         +W  VDQALLGWL GSMT SIACDV+D+++SR+VW ALE LYGA+SKAR+NQLR+ +QNTKK S+KM++YL  MKQ SESLKLAGE V  +YL SCVLS
Subjt:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS

Query:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY
        GLEA+ LPIVC IE KD+  W +L++ LVTFE  L+RLN++S ++   I++ S N+ ++KQN++G +    SQS   +  G  NS+      RGRGRGR+
Subjt:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY

Query:  SSYGRNSSKPTCQICGKYGHSA
        S Y  N+SKP+CQ+CGKYGH A
Subjt:  SSYGRNSSKPTCQICGKYGHSA

XP_022157750.1 uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]

3.5e-86

56.21

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Query:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF
        M  E   +    PQ   + +  T N +   N+SFGHPL TVLTV LD++NYSLWR MVLAVL+GQK DG+VLGT  KP +F  S  TEG +  L  NP++
Subjt:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF

Query:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS
         +W  VDQALLGWL GSMT SIACDV+D+++SR+VW ALE LYGA+SKAR+NQLR+ +QNTKK S+KM++YL  MKQ SESLKLAGE V  +YL SCVLS
Subjt:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS

Query:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY
        GLEA+ LPIVC IE KD+  W +L++ LVTFE  L+RLN++S ++   I++ S N+ ++KQN++G +    SQS   +  G  NS+      RGRGRGR+
Subjt:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY

Query:  SSYGRNSSKPTCQICGKYGHSA
        S Y  N+SKP+CQ+CGKYGH A
Subjt:  SSYGRNSSKPTCQICGKYGHSA

XP_030492910.1 uncharacterized protein LOC115709020 isoform X2 [Cannabis sativa]

2.9e-48

40.5

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Query:  NVADVVSQPQSTAS--TSRVTNVNQTTNSSFGHPLSTV---LTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKF--PTSTEGGTSELVS-NPK
        N A+    P S+ +  TS       +  ++F  P ST+     + LD  NYSLW++MV  +++G ++DGFV GT+  P +F    + EG  S  V  NP 
Subjt:  NVADVVSQPQSTAS--TSRVTNVNQTTNSSFGHPLSTV---LTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKF--PTSTEGGTSELVS-NPK

Query:  FEDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVL
        +E W   DQ L+GWL  SMT +IA +VM    +  +W ALE LYGA SK++++  R+A+Q T+KG+  M DYL   K  S+ L LAG+   E++L S VL
Subjt:  FEDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVL

Query:  SGLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSNINEA-SANFAYNKQNAIGGQSSQSNNNKNYGKMN---SHRGGTERGRGRGRYS
        SGL+A  LPIV  IE + +  W +L  LL++F++ + RL+ ++ SS    A +AN A   +N+  G+ + S ++ N  + N   ++RG   RGRGRGR +
Subjt:  SGLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSNINEA-SANFAYNKQNAIGGQSSQSNNNKNYGKMN---SHRGGTERGRGRGRYS

Query:  SYGRNSSKPTCQICGKYGHSA
        +   N++KPTCQ+CGK+GHSA
Subjt:  SYGRNSSKPTCQICGKYGHSA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CPQ7 ankyrin repeat-containing protein NPR4-like

1.0e-59

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Query:  STASTSRVTNVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTST-EGGTSELVSNPKFEDWNTVDQALLGWLLG
        ST + S+   V    N SFGHPLST LTV LD++NY+LW+ MVLAVL GQKVDG+VL TK  P+K+ T+T + G  E   NP +E+W+ VDQA  GWL G
Subjt:  STASTSRVTNVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTST-EGGTSELVSNPKFEDWNTVDQALLGWLLG

Query:  SMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEK
        SMT SIA DV++ + S +VW ALE L+G++SKAR+NQLR+++QNTKKG+MKM  YLA+MKQTSE LKLAGE VT SYL+SC+L+G EA+ LPI+C IE+K
Subjt:  SMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEK

A0A6J1DTZ7 uncharacterized protein LOC111024384 isoform X2

1.7e-86

56.21

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Query:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF
        M  E   +    PQ   + +  T N +   N+SFGHPL TVLTV LD++NYSLWR MVLAVL+GQK DG+VLGT  KP +F  S  TEG +  L  NP++
Subjt:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF

Query:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS
         +W  VDQALLGWL GSMT SIACDV+D+++SR+VW ALE LYGA+SKAR+NQLR+ +QNTKK S+KM++YL  MKQ SESLKLAGE V  +YL SCVLS
Subjt:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS

Query:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY
        GLEA+ LPIVC IE KD+  W +L++ LVTFE  L+RLN++S ++   I++ S N+ ++KQN++G +    SQS   +  G  NS+      RGRGRGR+
Subjt:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY

Query:  SSYGRNSSKPTCQICGKYGHSA
        S Y  N+SKP+CQ+CGKYGH A
Subjt:  SSYGRNSSKPTCQICGKYGHSA

A0A6J1DU77 uncharacterized protein LOC111024384 isoform X1

1.7e-86

56.21

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Query:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF
        M  E   +    PQ   + +  T N +   N+SFGHPL TVLTV LD++NYSLWR MVLAVL+GQK DG+VLGT  KP +F  S  TEG +  L  NP++
Subjt:  MENENVADVVSQPQSTASTSRVT-NVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTS--TEGGTSELVSNPKF

Query:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS
         +W  VDQALLGWL GSMT SIACDV+D+++SR+VW ALE LYGA+SKAR+NQLR+ +QNTKK S+KM++YL  MKQ SESLKLAGE V  +YL SCVLS
Subjt:  EDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLS

Query:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY
        GLEA+ LPIVC IE KD+  W +L++ LVTFE  L+RLN++S ++   I++ S N+ ++KQN++G +    SQS   +  G  NS+      RGRGRGR+
Subjt:  GLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSS--NINEASANFAYNKQNAIGGQ---SSQSNNNKNYGKMNSHRG-GTERGRGRGRY

Query:  SSYGRNSSKPTCQICGKYGHSA
        S Y  N+SKP+CQ+CGKYGH A
Subjt:  SSYGRNSSKPTCQICGKYGHSA

A0A803R2Q0 Uncharacterized protein

1.9e-53

42.09

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Query:  QSTASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGT----SELVSNPKFEDWNTVD
        Q+T + S +T    ++N S     F + LS   ++ LD  N+ LW++MV  +++G ++DGF+ G +P P +F  + E       S +  NP++E W   D
Subjt:  QSTASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGT----SELVSNPKFEDWNTVD

Query:  QALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKIL
        Q L+GWL GSMT +IA +VM  +++  +W ALE+LYGA S+A +++LR+ +Q T+KGS  MA+YL   +  ++SL LAGE   E +L S VLSGL+ + L
Subjt:  QALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKIL

Query:  PIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAY--NKQNAIGGQSSQSNNNKNYGKMNSH----RGGTERGRGRGRYSSYGRN
         IV +IE +++  W  L S+L++F+  L RLN IS SS  +  ASANFA      N  G +   SN N+  G+   +    RGG++RGRGRGR      N
Subjt:  PIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAY--NKQNAIGGQSSQSNNNKNYGKMNSH----RGGTERGRGRGRYSSYGRN

Query:  SSKPTCQICGKYGHSA
          KPTCQ+CGKYGHSA
Subjt:  SSKPTCQICGKYGHSA

A0A803R2Q2 Uncharacterized protein

1.9e-53

42.09

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Query:  QSTASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGT----SELVSNPKFEDWNTVD
        Q+T + S +T    ++N S     F + LS   ++ LD  N+ LW++MV  +++G ++DGF+ G +P P +F  + E       S +  NP++E W   D
Subjt:  QSTASTSRVTNVNQTTNSS-----FGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGT----SELVSNPKFEDWNTVD

Query:  QALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKIL
        Q L+GWL GSMT +IA +VM  +++  +W ALE+LYGA S+A +++LR+ +Q T+KGS  MA+YL   +  ++SL LAGE   E +L S VLSGL+ + L
Subjt:  QALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKIL

Query:  PIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAY--NKQNAIGGQSSQSNNNKNYGKMNSH----RGGTERGRGRGRYSSYGRN
         IV +IE +++  W  L S+L++F+  L RLN IS SS  +  ASANFA      N  G +   SN N+  G+   +    RGG++RGRGRGR      N
Subjt:  PIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN-INEASANFAY--NKQNAIGGQSSQSNNNKNYGKMNSH----RGGTERGRGRGRYSSYGRN

Query:  SSKPTCQICGKYGHSA
          KPTCQ+CGKYGHSA
Subjt:  SSKPTCQICGKYGHSA

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.7e-14

24.91

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Query:  LDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGTSELVSNPKFEDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASS
        L   NY +W   V A+  G ++ GF+ G+       P +T G  +    NP +  W   D+ +   +LG+++ S+   V     +  +W  L K+Y   S
Subjt:  LDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGTSELVSNPKFEDWNTVDQALLGWLLGSMTSSIACDVMDYKNSRDVWIALEKLYGASS

Query:  KARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEKDNIPWY-DLYSLLVTFETNLLRLNVISPSSN
           V QLR+ ++   KG+  + DY+  +    + L L G+ +        VL  L  +  P++  I  KD  P   +++  L+  E+ +L ++    S+ 
Subjt:  KARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEKDNIPWY-DLYSLLVTFETNLLRLNVISPSSN

Query:  INEASANFAYNKQNAIGGQSSQSNNNKNYGKMNSHRGGTERGRGRGRYSSYGRNSSKP---TCQICGKYGHSA
        +   +AN   ++       ++  N N  Y   N++       +    +     N SKP    CQICG  GHSA
Subjt:  INEASANFAYNKQNAIGGQSSQSNNNKNYGKMNSHRGGTERGRGRGRYSSYGRNSSKP---TCQICGKYGHSA

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.8e-09

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Query:  LDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGTSELVSNPKFEDWNTVDQALLGWLLGSMT-SSIACDVMDYKNSRDVWIALEKLYGAS
        ++E NY  WR + L       V G + GT                 L +N    +W   D  +   L G++T        +    SRD+W+ ++  +  +
Subjt:  LDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGTSELVSNPKFEDWNTVDQALLGWLLGSMT-SSIACDVMDYKNSRDVWIALEKLYGAS

Query:  SKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN
          AR  +L S ++    G M++ADY   MK+ ++SL+     VT+  L   VL+GL  K   I+ VI+ +   P +D  + ++  E + L+  +    ++
Subjt:  SKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNVISPSSN

Query:  INEASANFAYNKQNAIGGQSSQSNNNKNYGKMNSHRGGT-ERGRGRGRYSSY
        ++ +S++       A    + Q +     G     RG    RGRG GR+S Y
Subjt:  INEASANFAYNKQNAIGGQSSQSNNNKNYGKMNSHRGGT-ERGRGRGRYSSY

AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

3.8e-14

47.42

Show/hide

Query:  LLEGDGLNLHRGSGTNGYIQMNKFFVRSKT-GKVAESTGGY--DRGTTEVSK---------DIHKHIELKLVILKDKLIDQGYKAYEVFEKLEEAHI
        +  G GL   RGSGTNGY+Q NKFFVR +  GK  +   G+  D GT  +SK         D  + I LKL IL+DKL DQGY   E+ +KLEEA +
Subjt:  LLEGDGLNLHRGSGTNGYIQMNKFFVRSKT-GKVAESTGGY--DRGTTEVSK---------DIHKHIELKLVILKDKLIDQGYKAYEVFEKLEEAHI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTCTTCACCACACGCGAAAAAACCCTTAGGATTCTTGTTGTTGCGATCTCCCTTCACGACGCGAAAAAACCCTCCATGGACCATACGATTTCCCTTCACCATGCTGC
CGCCGCCCACAATCCACCTCCGTCCACCCTCTGCCAAATCACGATCTCCTTTCACGCTGCCGCCGAAACGCCCTTCACGGTCTCCCTTCACATTTGTGATTCTTTGTACA
TGGGGTTGGGCAATGACGAAGATCTGGTGGTTGAAGATGACGATTACGGGATGGAGGATGTGGCACCGGTGGTGGAAAGTCTTTTGTTGGAAGGAGATGGTTTAAATCTG
CACAGAGGATCGGGCACTAATGGCTACATCCAGATGAACAAGTTTTTTGTGAGGTCAAAGACTGGAAAGGTTGCTGAAAGCACTGGAGGATACGATCGGGGCACTACTGA
AGTTTCTAAAGACATTCACAAACATATTGAACTCAAACTTGTCATACTTAAGGACAAGCTCATTGACCAAGGCTATAAAGCTTATGAAGTTTTTGAAAAATTGGAGGAGG
CTCATATACTTAATCGGTCTCTTGATCCGATTCTAGAGAGCTGCGTTCTTTTTCTAACCATGGAAAATGAGAATGTTGCAGATGTTGTTTCACAGCCACAAAGCACTGCA
TCTACCTCCAGAGTTACTAATGTTAATCAAACTACAAACTCTTCCTTTGGCCATCCCCTTAGCACTGTTCTAACAGTGACACTTGATGAGAGAAATTATTCTCTATGGCG
TAGTATGGTTCTAGCAGTTTTGAAAGGCCAAAAGGTTGATGGTTTTGTTCTTGGAACCAAACCAAAACCTGCTAAATTTCCCACATCTACAGAAGGAGGAACTTCAGAAT
TAGTTAGCAACCCAAAATTTGAAGACTGGAATACAGTTGATCAAGCTTTACTTGGTTGGCTACTTGGCTCAATGACATCTTCCATAGCATGTGATGTTATGGATTACAAA
AATTCAAGAGATGTGTGGATAGCCTTGGAGAAATTGTATGGTGCATCGAGTAAGGCACGTGTCAATCAACTTAGAAGTGCAATGCAGAATACCAAAAAGGGAAGTATGAA
GATGGCTGACTATTTAGCATATATGAAACAAACTTCTGAAAGTTTAAAACTCGCAGGTGAAGCTGTGACTGAAAGTTATCTAACATCATGTGTTCTCTCTGGACTAGAGG
CAAAAATTTTGCCTATTGTTTGTGTGATTGAAGAAAAGGACAACATCCCATGGTATGACTTATATTCTCTACTTGTCACATTTGAAACTAATCTTCTTCGTTTGAATGTT
ATCAGTCCAAGTAGCAATATAAACGAAGCTAGTGCAAATTTTGCTTATAATAAACAAAATGCAATTGGAGGACAGAGTAGTCAGAGTAATAATAACAAGAATTATGGAAA
AATGAATAGTCACAGAGGAGGAACTGAAAGAGGAAGAGGTCGAGGTAGATACTCTTCTTATGGTCGAAACTCATCTAAGCCTACTTGCCAAATTTGTGGCAAGTATGGGC
ATTCTGCAGACAACGCGGTGTTAGTTTTCTGTCAGCCACTTAACCTCCCTTAA

mRNA sequence

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Protein sequence

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MVFTTREKTLRILVVAISLHDAKKPSMDHTISLHHAAAAHNPPPSTLCQITISFHAAAETPFTVSLHICDSLYMGLGNDEDLVVEDDDYGMEDVAPVVESLLLEGDGLNL
HRGSGTNGYIQMNKFFVRSKTGKVAESTGGYDRGTTEVSKDIHKHIELKLVILKDKLIDQGYKAYEVFEKLEEAHILNRSLDPILESCVLFLTMENENVADVVSQPQSTA
STSRVTNVNQTTNSSFGHPLSTVLTVTLDERNYSLWRSMVLAVLKGQKVDGFVLGTKPKPAKFPTSTEGGTSELVSNPKFEDWNTVDQALLGWLLGSMTSSIACDVMDYK
NSRDVWIALEKLYGASSKARVNQLRSAMQNTKKGSMKMADYLAYMKQTSESLKLAGEAVTESYLTSCVLSGLEAKILPIVCVIEEKDNIPWYDLYSLLVTFETNLLRLNV
ISPSSNINEASANFAYNKQNAIGGQSSQSNNNKNYGKMNSHRGGTERGRGRGRYSSYGRNSSKPTCQICGKYGHSADNAVLVFCQPLNLP

Lsi04G011990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome