CuGenDBv2

Gene ID	Lsi04G012180
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA replication regulator sld2 like
Genome location	chr04:18772741..18773244
RNA-Seq Expression	Lsi04G012180
Synteny	Lsi04G012180
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004149171.1 uncharacterized protein LOC101215948 [Cucumis sativus]

5.1e-76

92.9

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS--PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSS
        MVQKLQPIKGGGGS+KVGATGTISSLMMRELESMRS  KKPVTSKNKSSS   TTTVSSAASIPKRL QSKSF EVS+RRYNSVNNRSFGNSHNATKT S
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS--PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSS

Query:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        RDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_008454517.1 PREDICTED: uncharacterized protein LOC103494914 [Cucumis melo]

1.5e-75

92.35

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSS    TTTVSSA SIPKRL QSKSF EVS+RRYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_022976588.1 uncharacterized protein LOC111476940 [Cucurbita maxima]

1.0e-71

83.52

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPV SK KSSS T TVSS               AASIP RLQQSKSF+EVSNRRYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDVHR+PMLGSNDVYTDGNSYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_023536516.1 uncharacterized protein LOC111797670 [Cucurbita pepo subsp. pepo]

1.1e-70

82.42

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPVT K KSSS T TVSS               AASIP RLQQSKSF+EVSNRRYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDV R+PMLGSNDVYTDG+SYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_038899712.1 uncharacterized protein LOC120086960 [Benincasa hispida]

1.4e-73

90.42

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSSRD
        MVQKLQP KGGGGSIKVGATGTISSLMMRELESMRSGPKKPV SKNKS       SSAAS+PKRLQQSKSFEEVSNR YNSVN+RSFGNSHNATK  SRD
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSSRD

Query:  VHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        VHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  VHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAQ8 Uncharacterized protein

2.5e-76

92.9

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS--PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSS
        MVQKLQPIKGGGGS+KVGATGTISSLMMRELESMRS  KKPVTSKNKSSS   TTTVSSAASIPKRL QSKSF EVS+RRYNSVNNRSFGNSHNATKT S
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS--PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSS

Query:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        RDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A1S3BYW8 uncharacterized protein LOC103494914

7.3e-76

92.35

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSS    TTTVSSA SIPKRL QSKSF EVS+RRYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A5D3B9E2 Uncharacterized protein

7.3e-76

92.35

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSS    TTTVSSA SIPKRL QSKSF EVS+RRYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSS---PTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A6J1CGE9 uncharacterized protein LOC111010581

4.6e-70

87.72

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTT--VSSAASIPKRLQQSKSFEEVSN-RRYNSVNNRSFGNSHNATKTS
        M QKLQ IKGGGGSIKVGATGTISSLMMRELESMRSGP+K V SKNKS S TTT   SSAASIPKRLQQS+S +EVSN RRYNSVNNRSFGNSHN+TKTS
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTT--VSSAASIPKRLQQSKSFEEVSN-RRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDG-NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PMLGSND YTDG NSYR KPERKGLRAVAIVDVKCNNPDRAWASRPLS+RLRKLGF+KLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDG-NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A6J1INY9 uncharacterized protein LOC111476940

4.9e-72

83.52

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPV SK KSSS T TVSS               AASIP RLQQSKSF+EVSNRRYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSS---------------AASIPKRLQQSKSFEEVSNRRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDVHR+PMLGSNDVYTDGNSYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G54850.1 unknown protein

9.5e-28

40.89

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMR-SGPKKPVTSKNKSSSPTTT-VSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKT--
        MVQKL+ IKGGGGSIK+GATGT+++LM REL+SM+ + PK P T   +++ P +    +++S P+R +  KS +E S+   ++VNN      HNA  T  
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMR-SGPKKPVTSKNKSSSPTTT-VSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKT--

Query:  ---------------SSRDVHRLPMLGSNDVYTDGNSYREK------------------PER-KGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKL
                       +++ +H+L MLGS++V T    +  K                  P R K +  V IVDVKC NPDRAWA+ P++SRL+KLGFSKL
Subjt:  ---------------SSRDVHRLPMLGSNDVYTDGNSYREK------------------PER-KGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKL

Query:  SET
        +E+
Subjt:  SET

Sequences

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CDS sequence

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ATGGTTCAGAAACTGCAACCTATCAAAGGTGGTGGAGGATCCATTAAGGTTGGAGCCACCGGAACTATTAGCTCTCTAATGATGAGGGAGTTAGAGTCAATGAGATCCGG
CCCCAAGAAGCCAGTAACTTCCAAAAACAAATCTTCATCTCCTACTACTACTGTTTCATCTGCTGCTTCCATTCCTAAAAGACTACAACAAAGTAAATCGTTTGAAGAGG
TAAGCAATAGAAGATACAATAGTGTTAATAACAGAAGCTTTGGGAACTCTCATAATGCTACTAAAACCAGTTCGAGGGATGTCCATCGTCTGCCAATGCTTGGATCTAAT
GATGTTTATACTGATGGAAATAGCTATAGGGAGAAACCAGAAAGGAAAGGACTTAGAGCAGTTGCAATTGTGGATGTAAAGTGCAATAACCCTGATAGAGCTTGGGCTAG
CCGCCCTCTATCAAGTCGACTCAGAAAACTCGGTTTTTCAAAGCTATCAGAAACCTTTGCTTGA

mRNA sequence

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Protein sequence

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MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSPTTTVSSAASIPKRLQQSKSFEEVSNRRYNSVNNRSFGNSHNATKTSSRDVHRLPMLGSN
DVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

Lsi04G012180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome