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Lsi04G012780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G012780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDynein light chain
Genome locationchr04:20165609..20166304
RNA-Seq ExpressionLsi04G012780
SyntenyLsi04G012780
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607846.1 hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4587.16Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ
        MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P 
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ

Query:  PTQFSVMDT
        PT F   +T
Subjt:  PTQFSVMDT

XP_004146843.1 dynein light chain 2, cytoplasmic [Cucumis sativus]4.0e-4887.07Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--
        MLEGKAI+GETDML+AMQQDAL+LAAKALDSFDVTEATDIARFIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS+Q+Q  
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--

Query:  PQPT-QFSVMDTALKP
        P+PT  FS+MD  LKP
Subjt:  PQPT-QFSVMDTALKP

XP_008454627.1 PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo]1.3e-4684.62Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--
        MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q  
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--

Query:  --PQPTQFSVMDTALKP
          P    FS++DT LKP
Subjt:  --PQPTQFSVMDTALKP

XP_022941140.1 dynein light chain 2, cytoplasmic-like [Cucurbita moschata]1.9e-4587.16Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ
        MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P 
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ

Query:  PTQFSVMDT
        PT F+  +T
Subjt:  PTQFSVMDT

XP_038899068.1 dynein light chain 2, cytoplasmic [Benincasa hispida]2.5e-5094.55Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQE-QP
        MLEGKAIIGETDMLQAMQQDAL+LAAKALDSFDVTEATDIARFIKKEFD+ YGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASE+E QP
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQE-QP

Query:  QPTQFSVMDT
        QPTQFSVM+T
Subjt:  QPTQFSVMDT

TrEMBL top hitse value%identityAlignment
A0A1S3BZU7 Dynein light chain6.3e-4784.62Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--
        MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q  
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--

Query:  --PQPTQFSVMDTALKP
          P    FS++DT LKP
Subjt:  --PQPTQFSVMDTALKP

A0A5A7T1H5 Dynein light chain6.3e-4784.62Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--
        MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q  
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--

Query:  --PQPTQFSVMDTALKP
          P    FS++DT LKP
Subjt:  --PQPTQFSVMDTALKP

A0A6J1FSQ1 Dynein light chain9.0e-4687.16Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ
        MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P 
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ

Query:  PTQFSVMDT
        PT F+  +T
Subjt:  PTQFSVMDT

A0A6J1IHC9 Dynein light chain1.0e-4484.4Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ
        MLEGKA+IGETDMLQAMQQ+ALDLAAKALDSFDVTE TDIARFIKKEFD  YGGGWQCIVGTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ S  E+P 
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ

Query:  PTQFSVMDT
        PTQFS+++T
Subjt:  PTQFSVMDT

A0A6J1J2G7 Dynein light chain4.5e-4586.24Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ
        MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P 
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQ

Query:  PTQFSVMDT
        PT  +  +T
Subjt:  PTQFSVMDT

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm7.7e-1852.81Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M E KA+I   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

O96860 Dynein light chain 2, cytoplasmic7.7e-1852.81Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M + KA+I   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q22799 Dynein light chain 1, cytoplasmic1.3e-1751.69Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M++ KA+I   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q24117 Dynein light chain 1, cytoplasmic1.7e-1751.69Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M + KA+I   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q3MHR3 Dynein light chain 2, cytoplasmic3.8e-1750.56Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M + KA+I   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.5e-2152.17Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA
        MLEGKA++ ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+VG++FG F TH  G FIYF + +L  L+F+G++
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA

AT3G16120.1 Dynein light chain type 1 family protein2.8e-2356.04Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS
        MLEGKA + ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  YG GWQC+VGT+FG F TH  G FIYF +G+L  L+F+G+
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS

AT4G15930.1 Dynein light chain type 1 family protein1.4e-1444.71Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        +A+I   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +FGS+VTH    F+YF +   A+LLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

AT4G27360.1 Dynein light chain type 1 family protein2.2e-3678.02Show/hide
Query:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS
        MLEGKA++G+TDM Q M++DAL LA+KALD FDVTE T IARFIKKEFDR+YG GWQCIVGT FGSFVTHC GCFI+F VGSL ILLF+GS
Subjt:  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS

AT5G20110.1 Dynein light chain type 1 family protein1.8e-1450Show/hide
Query:  DMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YG  W CIVG+ FGSFVTH  GCFIYF +  L +LLF+
Subjt:  DMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGAAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGC
CACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGCACAGATTTTGGATCATTTGTGACACATTGTTTTGGAT
GCTTCATTTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAACAAGAACAACCTCAGCCAACTCAGTTTTCTGTTATGGACACAGCT
CTCAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
AGGAACACCAGCCAAAGTTTATCCTAAAGGCTCTATATAAATAACAAAATCTTTAGTCCCTTCCAGTCCTCCTCCGCCCACAGCTGCCGTCAGCTCCGCCGTGTGTGGTG
ATATATTTAGCCATGTTGGAAGGAAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGA
TGTCACTGAAGCCACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGCACAGATTTTGGATCATTTGTGACAC
ATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAACAAGAACAACCTCAGCCAACTCAGTTTTCTGTT
ATGGACACAGCTCTCAAACCTTGATTACATTTTCCTACAATATAATTCATCAACCAAACCTCCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCATATATATACATGCAAA
TTTAATCTATAATATGTTCG
Protein sequenceShow/hide protein sequence
MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDTA
LKP