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Lsi04G012910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G012910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:20339311..20339782
RNA-Seq ExpressionLsi04G012910
SyntenyLsi04G012910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA6417717.1 hypothetical protein FRX49_12303 [Trebouxia sp. A1-2]6.0e-0650Show/hide
Query:  LNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNL
        LNLP   G+NAF+HR SV++KK++LI++Q+ + L V  +T L  +D+PLLR  +N+L LL+L
Subjt:  LNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNL
RUP47580.1 hypothetical protein BC936DRAFT_145566 [Jimgerdemannia flammicorona]4.3e-0428.71Show/hide
Query:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF
        LLS  ++ + +GD+A +H T+ ++++M+L+D  +  ++ V A+  L S+DIP LR  +++L   +LL  Q  ++ +    D+I  +A  ++ ++  ++G 
Subjt:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF

Query:  H
        H
Subjt:  H
RUS26118.1 hypothetical protein BC938DRAFT_471207 [Jimgerdemannia flammicorona]4.3e-0428.71Show/hide
Query:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF
        LLS  ++ + +GD+A +H T+ ++++M+L+D  +  ++ V A+  L S+DIP LR  +++L   +LL  Q  ++ +    D+I  +A  ++ ++  ++G 
Subjt:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF

Query:  H
        H
Subjt:  H
TrEMBL top hitse value%identityAlignment
A0A433D9P1 Uncharacterized protein2.1e-0428.71Show/hide
Query:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF
        LLS  ++ + +GD+A +H T+ ++++M+L+D  +  ++ V A+  L S+DIP LR  +++L   +LL  Q  ++ +    D+I  +A  ++ ++  ++G 
Subjt:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF

Query:  H
        H
Subjt:  H
A0A433Q8I0 Uncharacterized protein2.1e-0428.71Show/hide
Query:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF
        LLS  ++ + +GD+A +H T+ ++++M+L+D  +  ++ V A+  L S+DIP LR  +++L   +LL  Q  ++ +    D+I  +A  ++ ++  ++G 
Subjt:  LLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGF

Query:  H
        H
Subjt:  H
A0A5J4XGS6 Uncharacterized protein2.9e-0650Show/hide
Query:  LNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNL
        LNLP   G+NAF+HR SV++KK++LI++Q+ + L V  +T L  +D+PLLR  +N+L LL+L
Subjt:  LNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTGAGTCGTCTCAATCTGCCTCACTGTTCTGGCGACAATGCTTTCAAGCACAGGACCTCTGTTATCATGAAGAAGATGAATCTCATCGATAATCAAAAGCTTTA
CAAGCTGTGTGTATGTGCGATCACCAGACTTCCTAGTAATGATATCCCACTTCTCAGGAGTTGTAACAATAATTTGAGTCTCCTCAATCTGTTGACGAGTCAATGTCTGA
TCTCCACTAAGTTCCCGTACTTTGACACCATAGTCCTGCAAGCGATTAGACAGATTCCCAACAATTTCAGCAACAAGGGCTTTCATAGGGCAATCTGCTGTAGTATAGTA
AGGACTGCGACATTGGTTTTCCCGGCACCAGTAGGGGCGCACAAGAGAACATTGTCGGCTTTAAAGAGAGCAGTCTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCCTGAGTCGTCTCAATCTGCCTCACTGTTCTGGCGACAATGCTTTCAAGCACAGGACCTCTGTTATCATGAAGAAGATGAATCTCATCGATAATCAAAAGCTTTA
CAAGCTGTGTGTATGTGCGATCACCAGACTTCCTAGTAATGATATCCCACTTCTCAGGAGTTGTAACAATAATTTGAGTCTCCTCAATCTGTTGACGAGTCAATGTCTGA
TCTCCACTAAGTTCCCGTACTTTGACACCATAGTCCTGCAAGCGATTAGACAGATTCCCAACAATTTCAGCAACAAGGGCTTTCATAGGGCAATCTGCTGTAGTATAGTA
AGGACTGCGACATTGGTTTTCCCGGCACCAGTAGGGGCGCACAAGAGAACATTGTCGGCTTTAAAGAGAGCAGTCTCGTAG
Protein sequenceShow/hide protein sequence
MLLSRLNLPHCSGDNAFKHRTSVIMKKMNLIDNQKLYKLCVCAITRLPSNDIPLLRSCNNNLSLLNLLTSQCLISTKFPYFDTIVLQAIRQIPNNFSNKGFHRAICCSIV
RTATLVFPAPVGAHKRTLSALKRAVS