| GenBank top hits | e value | %identity | Alignment |
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| KAA3471121.1 small nuclear ribonucleoprotein Sm D1-like [Gossypium australe] | 3.5e-37 | 69.29 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATET---SVDISMNTHLKAVKLTLKGKNPVTMD
+++ RFLMKLNNETVSIELKNGTVVHGTIT S+ L +F S +P R +L +A + VDISMNTHLK VKLTLKGKNPVTMD
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATET---SVDISMNTHLKAVKLTLKGKNPVTMD
Query: HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA K
Subjt: HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| KAG6593429.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia] | 5.7e-48 | 68.07 | Show/hide |
Query: ATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA------VKLFILNH---------------SNV
A+ VDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKP+ TA + + H SNV
Subjt: ATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA------VKLFILNH---------------SNV
Query: LLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETCSVNTCIVGKDYEFWDTKKWYCN
LL HFYTLLQLQG LWDVDED D VV VDARFVAVVS FET SVNTCIV KD EF D +C+
Subjt: LLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETCSVNTCIVGKDYEFWDTKKWYCN
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| OAY70558.1 Small nuclear ribonucleoprotein Sm D1 [Ananas comosus] | 1.4e-38 | 54.74 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETV+IELKNGTVVHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETC
VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA ++L LQ QG W V D AVVV R VA S+F C
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETC
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| RZB54124.1 Small nuclear ribonucleoprotein SmD1b [Glycine soja] | 8.3e-39 | 57.63 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGT+VHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVD
VRGNNIRYYILPDSLNLETLLVEETP++KPKKPTA +F N+ HF QG LWDV DE+ AV VGVD
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVD
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| RZC24201.1 Small nuclear ribonucleoprotein SmD1b [Glycine soja] | 3.5e-37 | 57.56 | Show/hide |
Query: RFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN
RFLMKLNNETVSIELKNGT+VHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLSVRGN
Subjt: RFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN
Query: NIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGV
NIRYYILPDSLNLETLLVEETP++KPKKPTA F ++ +HF Q LWDVDE+ AVVV V
Subjt: NIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A199V0P2 Small nuclear ribonucleoprotein Sm D1 | 6.8e-39 | 54.74 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETV+IELKNGTVVHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETC
VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA ++L LQ QG W V D AVVV R VA S+F C
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVDARFVAVVSIFETC
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| A0A218WVY5 Small nuclear ribonucleoprotein Sm D1 | 4.9e-37 | 70 | Show/hide |
Query: MKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIR
MKLNNETVSIELKNGTVVHGTIT C P+ + ++ + + FL AA VDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIR
Subjt: MKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIR
Query: YYILPDSLNLETLLVEETPRVKPKKPTAVK
YYILPDSLNLETLLVEETPRVKPKKPTA K
Subjt: YYILPDSLNLETLLVEETPRVKPKKPTAVK
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| A0A445FZD7 Small nuclear ribonucleoprotein Sm D1 | 4.0e-39 | 57.63 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGT+VHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVD
VRGNNIRYYILPDSLNLETLLVEETP++KPKKPTA +F N+ HF QG LWDV DE+ AV VGVD
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGVD
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| A0A445LLU6 Small nuclear ribonucleoprotein Sm D1 | 1.7e-37 | 57.56 | Show/hide |
Query: RFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN
RFLMKLNNETVSIELKNGT+VHGTI T VDISMNTHLK VKLTLKGKNPVT+DHLSVRGN
Subjt: RFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN
Query: NIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGV
NIRYYILPDSLNLETLLVEETP++KPKKPTA F ++ +HF Q LWDVDE+ AVVV V
Subjt: NIRYYILPDSLNLETLLVEETPRVKPKKPTAVKLFILNHSNVLLMHFYTLLQLQGGLWDVDEDEDAAVVVGV
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| A0A5B6VPS3 Small nuclear ribonucleoprotein Sm D1 | 1.7e-37 | 69.29 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATET---SVDISMNTHLKAVKLTLKGKNPVTMD
+++ RFLMKLNNETVSIELKNGTVVHGTIT S+ L +F S +P R +L +A + VDISMNTHLK VKLTLKGKNPVTMD
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATET---SVDISMNTHLKAVKLTLKGKNPVTMD
Query: HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA K
Subjt: HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O42661 Small nuclear ribonucleoprotein Sm D1 | 7.0e-25 | 47.45 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKL NETVSIELKNGT+VHGTI TSVD+ MNTHLKAVK+T+KG+ PV ++ LS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
+RGNNIRYYILPDSL L+TLL++++ + K KK V+
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| P62314 Small nuclear ribonucleoprotein Sm D1 | 3.5e-24 | 48.53 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKL++ETV+IELKNGT VHGTI T VD+SMNTHLKAVK+TLK + PV ++ LS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
+RGNNIRY+ILPDSL L+TLLV+ P+VK KK AV
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
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| Q3ZC10 Small nuclear ribonucleoprotein Sm D1 | 3.5e-24 | 48.53 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKL++ETV+IELKNGT VHGTI T VD+SMNTHLKAVK+TLK + PV ++ LS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
+RGNNIRY+ILPDSL L+TLLV+ P+VK KK AV
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
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| Q9SSF1 Small nuclear ribonucleoprotein SmD1a | 9.8e-35 | 59.85 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGTVVHGTI T VD+SMNTHLK VK++LKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A K
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| Q9SY09 Small nuclear ribonucleoprotein SmD1b | 1.0e-36 | 61.59 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGT+VHGTI T VD+SMNTHLKAVKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
VRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA K+
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT3G07590.1 Small nuclear ribonucleoprotein family protein | 7.0e-36 | 59.85 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGTVVHGTI T VD+SMNTHLK VK++LKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A K
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| AT3G07590.2 Small nuclear ribonucleoprotein family protein | 7.0e-36 | 59.85 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGTVVHGTI T VD+SMNTHLK VK++LKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A K
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVK
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| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 7.4e-38 | 61.59 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGT+VHGTI T VD+SMNTHLKAVKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
VRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA K+
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
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| AT4G02840.2 Small nuclear ribonucleoprotein family protein | 1.5e-38 | 63.04 | Show/hide |
Query: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
+++ RFLMKLNNETVSIELKNGT+VHGTIT D Y VD+SMNTHLKAVKLTLKGKNPVT+DHLS
Subjt: LEMHRFLMKLNNETVSIELKNGTVVHGTITVCPPSVQLSLFLLSSHDHLPTQPRIQRPLNVFLYAAAATETSVDISMNTHLKAVKLTLKGKNPVTMDHLS
Query: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
VRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA K+
Subjt: VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVKL
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| AT5G54390.1 HAL2-like | 2.4e-12 | 67.86 | Show/hide |
Query: SIDDPALATFCEPVESRNSNHSFT--LQGRLTVLRKQPLRVYSMLNYAAIARGYAE
S+DDP LAT CEPVE NSNH FT L + V RKQP+RVYSM+ YAAIARG AE
Subjt: SIDDPALATFCEPVESRNSNHSFT--LQGRLTVLRKQPLRVYSMLNYAAIARGYAE
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