; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G012960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G012960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAspartate aminotransferase
Genome locationchr04:20464905..20466103
RNA-Seq ExpressionLsi04G012960
SyntenyLsi04G012960
Gene Ontology termsGO:0006520 - cellular amino acid metabolic process (biological process)
GO:0009058 - biosynthetic process (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsIPR000796 - Aspartate/other aminotransferase
IPR015421 - Pyridoxal phosphate-dependent transferase, major domain
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZN01701.1 hypothetical protein DCAR_010455 [Daucus carota subsp. sativus]1.5e-1449.43Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTLSSMPTNFVVIMWWRFAF-------HVVKAI
        +YS+PP+HGASIVA ILKD DL+NEWT++ K MADRIISM Q+LF A +A+ + + L+ +     V+ W+++A        H+VK I
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTLSSMPTNFVVIMWWRFAF-------HVVKAI

XP_008466236.1 PREDICTED: aspartate aminotransferase, cytoplasmic [Cucumis melo]6.8e-1582.35Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWT++ K MADRIISM QQLF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

XP_010110107.2 aspartate aminotransferase 3, chloroplastic [Morus notabilis]1.5e-1475.44Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTL
        +YSNPPIHGASIVA ILKDRDL+NEWTI+ K MADRIISM QQLF A RAR   ++L
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTL

XP_022132269.1 aspartate aminotransferase, cytoplasmic [Momordica charantia]1.5e-1482.35Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWTI+ K MADRIISM Q+LF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

XP_038897549.1 aspartate aminotransferase, cytoplasmic [Benincasa hispida]6.8e-1584.31Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWTI+ K MADRIISM QQLF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

TrEMBL top hitse value%identityAlignment
A0A162AJ76 Aspartate aminotransferase7.3e-1549.43Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTLSSMPTNFVVIMWWRFAF-------HVVKAI
        +YS+PP+HGASIVA ILKD DL+NEWT++ K MADRIISM Q+LF A +A+ + + L+ +     V+ W+++A        H+VK I
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTLSSMPTNFVVIMWWRFAF-------HVVKAI

A0A1S3CQS2 Aspartate aminotransferase3.3e-1582.35Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWT++ K MADRIISM QQLF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

A0A5D3E5T1 Aspartate aminotransferase3.3e-1582.35Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWT++ K MADRIISM QQLF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

A0A6J1BSL0 Aspartate aminotransferase7.3e-1582.35Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVAT+LKDRDLFNEWTI+ K MADRIISM Q+LF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

A0A6J1IP44 Aspartate aminotransferase1.2e-1484.31Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVATILKDRDLFNEWTI+ K MADRIISM QQLF A  AR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

SwissProt top hitse value%identityAlignment
P28011 Aspartate aminotransferase 11.1e-1576.47Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PPIHGASIVA ILKDRDL+N+WTI+ K MADRII+M QQLF A RAR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

P28734 Aspartate aminotransferase, cytoplasmic4.6e-1468.63Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PP+HGASIVA ILKD DL+NEWT++ K MADRIISM Q+LF A +A+
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

P37833 Aspartate aminotransferase, cytoplasmic9.2e-1574.51Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YSNPPIHGASIVATILKD  +FNEWT++ K MADRIISM QQLF A + R
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

P46644 Aspartate aminotransferase 3, chloroplastic2.1e-1470.59Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PPIHGASIVA IL+D++LFNEWT++ K MADRIISM +QLF A R R
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

P46645 Aspartate aminotransferase, cytoplasmic isozyme 12.3e-1370.59Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PPIHGASIVATILK  D++N WTI+ K MADRI SM QQLF A +AR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

Arabidopsis top hitse value%identityAlignment
AT1G62800.1 aspartate aminotransferase 42.7e-1468.63Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +Y  PPIHGASIVATILK+ D++N+WTI+ K MADRIISM QQL+ A  AR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

AT1G62800.2 aspartate aminotransferase 42.7e-1468.63Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +Y  PPIHGASIVATILK+ D++N+WTI+ K MADRIISM QQL+ A  AR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

AT2G30970.1 aspartate aminotransferase 12.9e-0856.82Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQL
        +YSNPP+HGA +V+TIL+D +L + W  + KVMADRII M   L
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQL

AT5G11520.1 aspartate aminotransferase 31.5e-1570.59Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PPIHGASIVA IL+D++LFNEWT++ K MADRIISM +QLF A R R
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR

AT5G19550.1 aspartate aminotransferase 21.6e-1470.59Show/hide
Query:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR
        +YS+PPIHGASIVATILK  D++N WTI+ K MADRI SM QQLF A +AR
Subjt:  LYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGCCGCTTTCACCTTCAATTGGGCTGGGATGTCAGCCTACCATGGAAGCTCACTAGTTTCAATTCTAAATGTTCAAGTTGGGTTTGTGATATTCATCTATATCA
TCATCTATGTTTGTATTCAAACCCACCCATTCACGGAGCATCTATTGTCGCTACAATCCTAAAGGACAGGGATTTGTTCAATGAATGGACTATTAAGTTCAAGGTCATGG
CAGACCGTATTATTAGCATGCACCAACAACTTTTTTATGCCTCGCGCGCTAGAGCTGAAAATTCAACACTATCTTCGATGCCCACAAATTTTGTAGTTATAATGTGGTGG
AGGTTTGCTTTCCATGTTGTAAAGGCAATAAACTCTAAAGGAGTAGAGGCAGATTTTAGAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATGCCGCTTTCACCTTCAATTGGGCTGGGATGTCAGCCTACCATGGAAGCTCACTAGTTTCAATTCTAAATGTTCAAGTTGGGTTTGTGATATTCATCTATATCA
TCATCTATGTTTGTATTCAAACCCACCCATTCACGGAGCATCTATTGTCGCTACAATCCTAAAGGACAGGGATTTGTTCAATGAATGGACTATTAAGTTCAAGGTCATGG
CAGACCGTATTATTAGCATGCACCAACAACTTTTTTATGCCTCGCGCGCTAGAGCTGAAAATTCAACACTATCTTCGATGCCCACAAATTTTGTAGTTATAATGTGGTGG
AGGTTTGCTTTCCATGTTGTAAAGGCAATAAACTCTAAAGGAGTAGAGGCAGATTTTAGAGCTTAG
Protein sequenceShow/hide protein sequence
MKCRFHLQLGWDVSLPWKLTSFNSKCSSWVCDIHLYHHLCLYSNPPIHGASIVATILKDRDLFNEWTIKFKVMADRIISMHQQLFYASRARAENSTLSSMPTNFVVIMWW
RFAFHVVKAINSKGVEADFRA