; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G013260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G013260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:21050837..21051391
RNA-Seq ExpressionLsi04G013260
SyntenyLsi04G013260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE7457951.1 unnamed protein product [Symbiodinium pilosum]1.4e-0560.87Show/hide
Query:  GCGGYSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCE
        GCGG +CCGG +GCQ C+ C      GCQGCQ CQGC  CQ CGC+
Subjt:  GCGGYSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCE

KAG6591970.1 hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia]7.7e-4152.04Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGG-----------
        M V K S LVGLLAF+CLSL SA+R+LKNNDAE +L+++NV S QDN LQ+ +NAELKSIP+G++PK SSVG   GDC   G  CG  G           
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGG-----------

Query:  ---------YSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQ-ECQSC-----GCEV----------HINDSKVERESI-QANEPEPPIVTIVPPVQPT
                 Y   GGSSGCQ C+T SPC WQGC G Q CQGCQ  CQ C     GC+            +NDSK++ ESI    EPEPP++       P 
Subjt:  ---------YSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQ-ECQSC-----GCEV----------HINDSKVERESI-QANEPEPPIVTIVPPVQPT

Query:  NHNIKSNGEANQVMKSNGGLV
        NH+IKS+G ANQ MKSNGGLV
Subjt:  NHNIKSNGEANQVMKSNGGLV

KAG6607873.1 hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia]7.8e-2547.89Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSI-PKGSIPKFSSVGPTNGDCCNYGNICGCGGYSC-----CG
        M V K S+LV LL  +CLS  SA+R+LK+ND+EN+ I+++V  GQ+  L N  +AEL +I P+GSIPKF S      DCCN+GN    GGY C     CG
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSI-PKGSIPKFSSVGPTNGDCCNYGNICGCGGYSC-----CG

Query:  GSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV
         +SGC+  ++CSPCQW                 CGC V  + S V+ ESIQ +E +  +   VP V+P NHNIK +G ANQ MKSNGGLV
Subjt:  GSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV

KGN55137.1 hypothetical protein Csa_012773 [Cucumis sativus]3.1e-5860.38Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGG
        M V + SLLVGLLAF+CLSL SA+RILKNNDAENQLI D+VPSG++NH QNS++ ELKSIP  S+ K SS+ P NGDCC+YG  C           GCGG
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGG

Query:  YSCC-----------------GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGE
         S C                 GGSS CQSC+TCS CQWQGC GCQECQGCQ CQSCGC+  ++DSKVE++S+Q  EP  P+VTIVPP +PT+++IKS+G 
Subjt:  YSCC-----------------GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGE

Query:  ANQVMKSNGGLV
        +NQ +KSNGGLV
Subjt:  ANQVMKSNGGLV

XP_023535133.1 mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]1.7e-4050.88Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGG-----------
        M V K S LVGLLAF+CLSL SA+R+LKNNDAE +L+S+NV S QDN LQ+ +NAELKSIP+G++PK SSVG   GDC   G  CG  G           
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGG-----------

Query:  ---------YSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQ--------ECQSC-----GCEV----------HINDSKVERESI-QANEPEPPIVTI
                 Y   GGSSGCQ C+T SPC WQGC G Q CQGCQ         CQ C     GC+            +NDSK++ ESI    EPEPP++  
Subjt:  ---------YSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQ--------ECQSC-----GCEV----------HINDSKVERESI-QANEPEPPIVTI

Query:  VPPVQPTNHNIKSNGEANQVMKSNGGLV
             P NH+IKS+G ANQ MKSNGGLV
Subjt:  VPPVQPTNHNIKSNGEANQVMKSNGGLV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F6 Uncharacterized protein1.5e-5860.38Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGG
        M V + SLLVGLLAF+CLSL SA+RILKNNDAENQLI D+VPSG++NH QNS++ ELKSIP  S+ K SS+ P NGDCC+YG  C           GCGG
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGG

Query:  YSCC-----------------GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGE
         S C                 GGSS CQSC+TCS CQWQGC GCQECQGCQ CQSCGC+  ++DSKVE++S+Q  EP  P+VTIVPP +PT+++IKS+G 
Subjt:  YSCC-----------------GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGE

Query:  ANQVMKSNGGLV
        +NQ +KSNGGLV
Subjt:  ANQVMKSNGGLV

A0A5A7V9R7 Uncharacterized protein4.3e-0581.58Show/hide
Query:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLIS
        M V K SLLVGLLAF+CLSL SA+RILKNNDAENQLI+
Subjt:  MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTTGCAAAAATTAGTTTACTGGTTGGTCTCTTGGCGTTTGTCTGCTTAAGCCTCTGCTCCGCCCATCGAATTCTCAAGAACAACGATGCTGAAAACCAATTAAT
AAGTGACAATGTGCCTTCTGGACAAGATAATCACCTACAAAATTCCAGCAATGCTGAGCTGAAAAGTATACCGAAAGGCAGCATACCAAAATTCAGTTCTGTTGGTCCAA
CAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCAATCTTGCCACACTTGTTCGCCATGTCAATGG
CAGGGATGCCAAGGATGTCAAGAGTGCCAAGGATGCCAGGAATGCCAGAGTTGTGGCTGCGAAGTCCACATCAACGACTCTAAAGTTGAACGGGAATCTATTCAAGCAAA
TGAACCTGAACCACCTATTGTTACAATTGTTCCACCAGTCCAGCCAACAAATCATAACATCAAATCTAATGGGGAAGCAAATCAGGTCATGAAATCCAATGGCGGTCTGG
TTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGTTGCAAAAATTAGTTTACTGGTTGGTCTCTTGGCGTTTGTCTGCTTAAGCCTCTGCTCCGCCCATCGAATTCTCAAGAACAACGATGCTGAAAACCAATTAAT
AAGTGACAATGTGCCTTCTGGACAAGATAATCACCTACAAAATTCCAGCAATGCTGAGCTGAAAAGTATACCGAAAGGCAGCATACCAAAATTCAGTTCTGTTGGTCCAA
CAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCAATCTTGCCACACTTGTTCGCCATGTCAATGG
CAGGGATGCCAAGGATGTCAAGAGTGCCAAGGATGCCAGGAATGCCAGAGTTGTGGCTGCGAAGTCCACATCAACGACTCTAAAGTTGAACGGGAATCTATTCAAGCAAA
TGAACCTGAACCACCTATTGTTACAATTGTTCCACCAGTCCAGCCAACAAATCATAACATCAAATCTAATGGGGAAGCAAATCAGGTCATGAAATCCAATGGCGGTCTGG
TTTAG
Protein sequenceShow/hide protein sequence
MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGGYSCCGGSSGCQSCHTCSPCQW
QGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV