; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G013330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G013330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationchr04:21107200..21107634
RNA-Seq ExpressionLsi04G013330
SyntenyLsi04G013330
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]8.7e-6491.72Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ HFRPPS LLFP VKSHLSVVSI+FP+SQFLH PSHA  P GFALMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST-KDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS+ KDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST-KDSSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5985.42Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ   RPPS  LFPA+KSHLSVVSI FPSSQFLHNPSH  G A F  MAKSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]5.6e-6390.28Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ HFRPPS LLFPAVKSHLS+ SI+FP+SQFLH PSHA  PA F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RSTKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]1.7e-5984.72Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ   RPPS  LFPA+KSH+SVVSI FPSSQFLHNPSH  GP  F  MAKSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]7.9e-6592.41Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSST LLQFPLLQ HFRPPS L FPAVKSHLSVVSITFP++QFLHNPSHA   AGF LMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR-STKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR STKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR-STKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein2.7e-6390.28Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ HFRPPS LLFPAVKSHLS+ SI+FP+SQFLH PSHA  PA F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RSTKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-14.2e-6491.72Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ HFRPPS LLFP VKSHLSVVSI+FP+SQFLH PSHA  P GFALMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST-KDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS+ KDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST-KDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like8.2e-6084.72Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ   RPPS  LFPA+KSH+SVVSI FPSSQFLHNPSH  GP  F  MAKSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769471.0e-5784.17Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLL+FPLL  H RPPS L FPA+KSHLSVVSI FP+SQFL NPSH  GPA FALMAK PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST
        I GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRST

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like2.4e-5985.42Show/hide
Query:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        MSSTNLLQFPLLQ   RPP   LFP  KSHLSVVSI FPSSQFLHNPSH  GPA FA MAKSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGY
Subjt:  MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.1e-2981.08Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS
        EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLR+ KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS

Q09G11 Translation initiation factor IF-1, chloroplastic1.1e-2981.33Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRS KDS+
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic2.5e-2981.08Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLR+ KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic1.6e-3167Show/hide
Query:  FLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS
        FL  P   P     +  + +  + + EQKW HEG ++ESLPNGMFRVRLDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRS+  S
Subjt:  FLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS

Q94KR9 Translation initiation factor IF-1, chloroplastic1.9e-2974.67Show/hide
Query:  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKD
        + EQKW+HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YRLR  ++
Subjt:  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKD

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.0e-2249.23Show/hide
Query:  LLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSE--QKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKN
        LL   FR  + +L P +     V S +  + + +     A G  G A  +K  K    E   K   EG V ESLPNGMFRV L+N D ILGYI GKIRKN
Subjt:  LLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSE--QKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKN

Query:  FVRILPGDRVRVEVSRYDSTKGRIVYRLRS
        F+RILPGD+V+VE+S YDSTKGRI++R+ S
Subjt:  FVRILPGDRVRVEVSRYDSTKGRIVYRLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACACCACTTCCGGCCACCGTCCGCTCTCCTTTTTCCTGCCGTCAAATCCCATCTCTCCGTCGTCTCAATCAC
TTTTCCCAGCTCCCAGTTCCTCCATAACCCTTCCCATGCTCCGGGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGATACCTCCGAGCAGAAATGGAGCC
ATGAAGGCTCGGTCGTTGAGTCTCTTCCTAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTG
CGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTACGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAGTACTAAAGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACACCACTTCCGGCCACCGTCCGCTCTCCTTTTTCCTGCCGTCAAATCCCATCTCTCCGTCGTCTCAATCAC
TTTTCCCAGCTCCCAGTTCCTCCATAACCCTTCCCATGCTCCGGGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGATACCTCCGAGCAGAAATGGAGCC
ATGAAGGCTCGGTCGTTGAGTCTCTTCCTAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTG
CGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTACGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAGTACTAAAGATTCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFV
RILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS