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Lsi04G013550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G013550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein FAM33A
Genome locationchr04:21292386..21297143
RNA-Seq ExpressionLsi04G013550
SyntenyLsi04G013550
Gene Ontology termsGO:0000278 - mitotic cell cycle (biological process)
GO:0007059 - chromosome segregation (biological process)
GO:0051301 - cell division (biological process)
GO:0000940 - condensed chromosome outer kinetochore (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005876 - spindle microtubule (cellular component)
GO:0008017 - microtubule binding (molecular function)
InterPro domainsIPR026762 - Spindle and kinetochore-associated protein 2
IPR042091 - Ska2, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591515.1 hypothetical protein SDJN03_13861, partial [Cucurbita argyrosperma subsp. sororia]9.4e-6482.91Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG DHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKL  RIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM+ KMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ
        MG PFVSD DD AFVQFKQ   +   W     +  GEDGQE+A+C+DVNKLLFSAVVQ
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ

XP_004145489.1 spindle and kinetochore-associated protein 2 [Cucumis sativus]7.9e-6381.99Show/hide
Query:  MGFD-HLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQA
        MG D HL QHHQAADGL NLFTKAN DLSVVQYRLEKEFQQIYPESANPMKLVSRIKKI+DDISTLKEQCREVL+AKQDVID+ARTVL+GNRNMLQKMQA
Subjt:  MGFD-HLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQA

Query:  SMGVPFVSDLDDSAFVQFKQVFIVNVPWFA-----FCGEDGQEEADCNDVNKLLFSAVVQA
        SMG+PFVSDLDD AF +FKQ   +   W       F GEDGQE+ADCNDVNKLLFSAVVQA
Subjt:  SMGVPFVSDLDDSAFVQFKQVFIVNVPWFA-----FCGEDGQEEADCNDVNKLLFSAVVQA

XP_022141272.1 spindle and kinetochore-associated protein 2 [Momordica charantia]1.0e-6281.53Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG  HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKLVSRIKKIRDDISTL+EQCRE+LMAKQDVIDKARTVLVGNRNMLQKMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVV
        MG+P VSDLDD AF QFK+   +   W     +  G+DGQE+AD NDVNKLLFSAVV
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVV

XP_022935897.1 spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita moschata]1.4e-6282.28Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG DHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKL  RIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM+ KMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ
        MG PFVSD DD AFVQFKQ   +   W     +  GEDGQE+A+ +DVNKLLFSAVVQ
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ

XP_038898183.1 spindle and kinetochore-associated protein 2 [Benincasa hispida]1.0e-6585.53Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        M  DHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQK+QAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQA
        MGVPFVSDLDD AF +FKQ   +   W     +  GEDGQE+AD NDVNKLLFSAVVQA
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQA

TrEMBL top hitse value%identityAlignment
A0A0A0L5I9 Protein FAM33A3.8e-6381.99Show/hide
Query:  MGFD-HLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQA
        MG D HL QHHQAADGL NLFTKAN DLSVVQYRLEKEFQQIYPESANPMKLVSRIKKI+DDISTLKEQCREVL+AKQDVID+ARTVL+GNRNMLQKMQA
Subjt:  MGFD-HLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQA

Query:  SMGVPFVSDLDDSAFVQFKQVFIVNVPWFA-----FCGEDGQEEADCNDVNKLLFSAVVQA
        SMG+PFVSDLDD AF +FKQ   +   W       F GEDGQE+ADCNDVNKLLFSAVVQA
Subjt:  SMGVPFVSDLDDSAFVQFKQVFIVNVPWFA-----FCGEDGQEEADCNDVNKLLFSAVVQA

A0A6J1CJF1 Protein FAM33A5.0e-6381.53Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG  HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKLVSRIKKIRDDISTL+EQCRE+LMAKQDVIDKARTVLVGNRNMLQKMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVV
        MG+P VSDLDD AF QFK+   +   W     +  G+DGQE+AD NDVNKLLFSAVV
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVV

A0A6J1F6V9 Protein FAM33A6.5e-6382.28Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG DHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKL  RIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM+ KMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ
        MG PFVSD DD AFVQFKQ   +   W     +  GEDGQE+A+ +DVNKLLFSAVVQ
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ

A0A6J1FBS9 Protein FAM33A1.6e-6182.05Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        MG DHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKL  RIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM+ KMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWFAFCGE--DGQEEADCNDVNKLLFSAVVQ
        MG PFVSD DD AFVQFKQ   +   W        DGQE+A+ +DVNKLLFSAVVQ
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWFAFCGE--DGQEEADCNDVNKLLFSAVVQ

A0A6J1IP41 Protein FAM33A2.7e-6181.01Show/hide
Query:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS
        M  D LHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYP+SANPMKL  RIKKIRDDISTLKEQCR+VLMAKQDVIDKARTVLVGNRNML+KMQAS
Subjt:  MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQAS

Query:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ
        MG PFVSD DD AFVQFKQ   +   W     +  GEDGQE+A+ +DVNKLLFSAVVQ
Subjt:  MGVPFVSDLDDSAFVQFKQVFIVNVPWF----AFCGEDGQEEADCNDVNKLLFSAVVQ

SwissProt top hitse value%identityAlignment
Q2TBY0 Spindle and kinetochore-associated protein 26.6e-0432.22Show/hide
Query:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM--LQKMQ
        D L  +F KA+ DL  +QYRLE E +  YP+SA   NP+ L+  +  I+    TL  + + + + +++   K+R     N+ M  +Q++Q
Subjt:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNM--LQKMQ

Q4R8E8 Spindle and kinetochore-associated protein 23.9e-0429.55Show/hide
Query:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQ
        D L  +F KA  DL  +QYRLE E +  +P+SA   NP+ L+  +  ++    TL  + + V + +++   +    +    N++QK+Q
Subjt:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQ

Q8WVK7 Spindle and kinetochore-associated protein 21.3e-0431.82Show/hide
Query:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQ
        D L  +F KA  DL  +QYRLE E +  +P+SA   NP+ L+  +  I+    TL  + + V + +++   +    +    NM+QK+Q
Subjt:  DGLTNLFTKANHDLSVVQYRLEKEFQQIYPESA---NPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQ

Arabidopsis top hitse value%identityAlignment
AT2G24970.1 unknown protein6.7e-3650.68Show/hide
Query:  HQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQASMGVPFV
        + HHQA D L N+F++A+HDL+VV  +L+KEFQQ+YP +ANPMKL+ RIKK+++D++ LK QC ++L AKQD+IDKA+T LVGN N++QKM AS+G    
Subjt:  HQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQASMGVPFV

Query:  SDLDDSAFVQFKQVFIVNVPWFAFCGEDGQEEADCNDVNKLLFSAV
         D DD A   F Q+                E+AD  D+NK+LFSA+
Subjt:  SDLDDSAFVQFKQVFIVNVPWFAFCGEDGQEEADCNDVNKLLFSAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTCGATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGA
GTTTCAGCAAATATATCCTGAGAGCGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGA
TGGCCAAACAGGATGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGAT
GATTCTGCATTTGTGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTT
GCTATTCTCAGCCGTTGTGCAGGCATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAGAAAAAACAACGTATTTTAATTTTTTTGGCCATTGGATGTAGGAGAGAGGAGCCACAATTTTTTTTATTGAGTAGTTATTAAAAATATGCAAATGATTGAATTC
ACATCTAACGATTTGTCGGCTCACAATTATTAAGAGACAGTTACATTATGGTGATCTTATTAACCAAAGCCTTCGAATCATTGGATCTGGACTGAGTTTGGGCTATCAAT
TTTTGAATCCGCCCAATGATGAGAGCGACCAACACTAGTTAATGACATGAATTTCAACAATTACAAGTACATTAATTAGGTTTTCAATTCAAAATGTTTTTGCAATTTTG
CAATAGTGTCATTTATTTGATTTTACAACTTAAGAAGGCTATTTTCCTTGAAAAAACTATTTCGAGGCATATAACACGTGGCGCAAAGTAAATGCATCCATCACATCACC
CCAATCTTTCTTTTGAAAGAAGGCAAATACATAGAATCCATTGGCGCGGAAGGAGGTTCAAATTAAGAGAGCGCGAAAATCCTAGCAGAGAGAGAAGATGGGGTTCGATC
ATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATA
TATCCTGAGAGCGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGATGGCCAAACAGGA
TGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGATGATTCTGCATTTG
TGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTTGCTATTCTCAGCC
GTTGTGCAGGCATGA
Protein sequenceShow/hide protein sequence
MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQASMGVPFVSDLD
DSAFVQFKQVFIVNVPWFAFCGEDGQEEADCNDVNKLLFSAVVQA