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Lsi04G014130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G014130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionleucine-rich repeat extensin-like protein 1
Genome locationchr04:21897168..21897620
RNA-Seq ExpressionLsi04G014130
SyntenyLsi04G014130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]2.5e-5388Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYI-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANYFLGAQP
        MPF G RRIL S GLWIVA  LFSASS+AQMAVPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNFYG + MAPPATPSY  WGPPPPVANYFLGA+P
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYI-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANYFLGAQP

Query:  SGEMPQTVGPRDYSYPYYYFYSSNS
        SGEMPQTVGPRDYSYPYYYFYSSNS
Subjt:  SGEMPQTVGPRDYSYPYYYFYSSNS

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3866.2Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG
        MPF G      SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT P P   ++YI PPPP FYG YM PP   T SY   GPPPPVANY  G
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG

Query:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFV
        AQPSG+MPQTVGPRDYSYPYYYFYSSN GS S  S F+V  V
Subjt:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFV

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]3.8e-3866.19Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG
        MPF G  R   SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT P P   ++YI PPPP FYG YM PP   T SY   GP PPVANY  G
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG

Query:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVV
        AQPSG+MPQTVGPRDYSYPYYYFYSSN GS S    F+V
Subjt:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVV

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]8.2e-4163.46Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPPHSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPP
        MPF G  R   SLGL ++A ALF   S+AQ+ VPST QLCIS C TCPV+CT P   P P SY        PPPP FYG YM PP   T SY F GPPPP
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPPHSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPP

Query:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF
        VANY  GAQPSG+MPQTVGPRDYSYPYYYFYSSN GSF+  S F++ F C FH VF
Subjt:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]5.5e-3767.91Show/hide
Query:  VALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI---PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRD
        +A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT P P   ++YI   PPPP FYG YM PP   T SY   GPPPPVANY  GAQPSG+MPQTVGPRD
Subjt:  VALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI---PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRD

Query:  YSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF
        YSYPYYYFYSSN GS S  S F+V FVC FH VF
Subjt:  YSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)1.6e-6686.75Show/hide
Query:  MCHTKTMPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYI-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANY
        MCH+KTMPF G RRIL S GLWIVA  LFSASS+AQMAVPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNFYG + MAPPATPSY  WGPPPPVANY
Subjt:  MCHTKTMPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYI-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANY

Query:  FLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFV
        FLGA+PSGEMPQTVGPRDYSYPYYYFYSSNSGSF+YISKF+V FVCL HFV
Subjt:  FLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFV

A0A2N9HA71 Uncharacterized protein1.5e-1945.96Show/hide
Query:  LWIVA-LALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPHSYI---PPPPNFYGAYMAPPATP----SYSFWGPPPPV
        +WI+  L L + +SE Q+  PS+G LCISDC+TCPVIC+ PP                 PP SY    PPPP+   +   PPA+P    SYS WG PPP 
Subjt:  LWIVA-LALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPHSYI---PPPPNFYGAYMAPPATP----SYSFWGPPPPV

Query:  ANYFLGAQPSG----EMPQTVGPRDYSYPYYYFYSSN-SGSFSYISKFVVFFVC-LFHFVF
          YF    PSG     MP   GP DY YPYYYFYSS  + S S  + F  F +  LFHFVF
Subjt:  ANYFLGAQPSG----EMPQTVGPRDYSYPYYYFYSSN-SGSFSYISKFVVFFVC-LFHFVF

A0A5N6RNK5 Uncharacterized protein2.8e-1844.87Show/hide
Query:  LGLWIVALALFSASSEA-QMAVPSTGQLCISDCSTCPVICTAPPPP--HSYIPPPPNFYGAYMAPP------------ATP----SYSFWG-PPPPVANY
        L + I+ L +F+  + A Q+  PST +LCISDC+TCPVIC+ PPPP   S+ PP P+ + +  +PP            ATP     Y+ WG PPPP   Y
Subjt:  LGLWIVALALFSASSEA-QMAVPSTGQLCISDCSTCPVICTAPPPP--HSYIPPPPNFYGAYMAPP------------ATP----SYSFWG-PPPPVANY

Query:  FLGAQPSG---EMPQTVG-PRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF
        +    PSG    +P T G PRDY YPYYYFY+S++ S S  + FV   + LFHFVF
Subjt:  FLGAQPSG---EMPQTVG-PRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF

A0A6J1FKD3 leucine-rich repeat extensin-like protein 21.9e-3866.19Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG
        MPF G  R   SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT P P   ++YI PPPP FYG YM PP   T SY   GP PPVANY  G
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLG

Query:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVV
        AQPSG+MPQTVGPRDYSYPYYYFYSSN GS S    F+V
Subjt:  AQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVV

A0A6J1IUS7 leucine-rich repeat extensin-like protein 14.0e-4163.46Show/hide
Query:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPPHSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPP
        MPF G  R   SLGL ++A ALF   S+AQ+ VPST QLCIS C TCPV+CT P   P P SY        PPPP FYG YM PP   T SY F GPPPP
Subjt:  MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPPHSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPP

Query:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF
        VANY  GAQPSG+MPQTVGPRDYSYPYYYFYSSN GSF+  S F++ F C FH VF
Subjt:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein7.0e-0627.22Show/hide
Query:  ILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICT------------------------APPPPHSYIP--------PPPNFYGAYMAPPA
        I+  + L +V +   S S +  +  P    LCIS+CSTCP IC+                         PPPPH + P        PPP     +  PP 
Subjt:  ILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICT------------------------APPPPHSYIP--------PPPNFYGAYMAPPA

Query:  TPSYSFWGPPPPVANYFLGAQPS------GEMPQTVGPRD--YSYPYYYFYSSNSGSFSYISKFVVFFV
           +    PPPP++    G+ PS          Q+ G +   Y +PY+YFY++++ +  + S F++  V
Subjt:  TPSYSFWGPPPPVANYFLGAQPS------GEMPQTVGPRD--YSYPYYYFYSSNSGSFSYISKFVVFFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCATACCAAAACGATGCCGTTTCTGGGAATAAGGCGAATTCTTGCCTCTTTGGGGCTTTGGATCGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAAT
GGCTGTCCCCTCTACCGGACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACAGCGCCTCCTCCTCCACACTCTTACATCCCGCCTCCGCCGAACTTTT
ATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTCGCGAATTATTTTTTGGGCGCACAACCTTCCGGTGAGATGCCTCAG
ACGGTGGGGCCTCGGGATTATTCTTACCCTTATTACTATTTCTATAGTTCAAATTCGGGTTCATTCTCTTATATTTCTAAGTTCGTTGTCTTCTTTGTGTGTTTGTTTCA
TTTTGTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCATACCAAAACGATGCCGTTTCTGGGAATAAGGCGAATTCTTGCCTCTTTGGGGCTTTGGATCGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAAT
GGCTGTCCCCTCTACCGGACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACAGCGCCTCCTCCTCCACACTCTTACATCCCGCCTCCGCCGAACTTTT
ATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTCGCGAATTATTTTTTGGGCGCACAACCTTCCGGTGAGATGCCTCAG
ACGGTGGGGCCTCGGGATTATTCTTACCCTTATTACTATTTCTATAGTTCAAATTCGGGTTCATTCTCTTATATTTCTAAGTTCGTTGTCTTCTTTGTGTGTTTGTTTCA
TTTTGTTTTCTGA
Protein sequenceShow/hide protein sequence
MCHTKTMPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYIPPPPNFYGAYMAPPATPSYSFWGPPPPVANYFLGAQPSGEMPQ
TVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF