; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G014780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G014780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLIM domain-containing protein WLIM1
Genome locationchr04:22508454..22509988
RNA-Seq ExpressionLsi04G014780
SyntenyLsi04G014780
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591426.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4798.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

XP_004141291.1 LIM domain-containing protein WLIM1 [Cucumis sativus]9.8e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

XP_008452649.1 PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo]9.8e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

XP_022936105.1 LIM domain-containing protein WLIM1 [Cucurbita moschata]1.7e-4798.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

XP_038900157.1 LIM domain-containing protein WLIM1 [Benincasa hispida]3.4e-48100Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

TrEMBL top hitse value%identityAlignment
A0A0A0L3T9 Uncharacterized protein4.8e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

A0A1S3BUC8 LIM domain-containing protein WLIM14.8e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

A0A5A7VG01 LIM domain-containing protein WLIM14.8e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

A0A6J1CLL5 LIM domain-containing protein WLIM18.1e-4896.77Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEV
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQ+FKRTGSLDKSFEGTPKIGKPEKPADSE+
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEV

A0A6J1IP16 LIM domain-containing protein WLIM1-like8.1e-4898.91Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a6.4e-2661.73Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPK
        M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRPHF+QLFK +GS  K+F+   K
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPK

O80839 LIM domain-containing protein PLIM2a2.0e-2758.89Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPAD
        M+F GT  KC ACDKTVY++D LT +   YHK+CFRC HC GTL +SNY+S +GVLYC+PHF+QLFK +G+  K+F+     GK EKP D
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPAD

P29675 Pollen-specific protein SF38.1e-3775.82Show/hide
Query:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        +F GTTQKC  C+KTVYLVDKL A+ RVYHKACFRCHHCN TLKLSN+NSF+GV+YCR HFDQLFKRTGSL+KSF+GTPK  KPE+    E
Subjt:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

Q500W4 LIM domain-containing protein PLIM2c4.9e-2655.91Show/hide
Query:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEVA
        AF GTT KC ACDKTVY++D +T +   YHK+CFRC HCNGTL + NY+S +GVLYC+ HF+QLFK +G+  K+F+     GK EK  D+  A
Subjt:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEVA

Q94JX5 LIM domain-containing protein WLIM16.6e-4791.3Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQ FKRTGSL+KSFEGTPKIGKP++P + E
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

Arabidopsis top hitse value%identityAlignment
AT1G01780.1 GATA type zinc finger transcription factor family protein1.3e-2656.82Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP
        M+F GT  KC  CDKTVY+VD L+ +   YHK+CFRC HC GTL++SNY+S +GVLYC+ HF+QLFK +G+  K+F+     GK EKP
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKP

AT1G10200.1 GATA type zinc finger transcription factor family protein4.7e-4891.3Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE
        MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQ FKRTGSL+KSFEGTPKIGKP++P + E
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE

AT2G39900.1 GATA type zinc finger transcription factor family protein4.6e-2761.73Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPK
        M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRPHF+QLFK +GS  K+F+   K
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPK

AT2G45800.1 GATA type zinc finger transcription factor family protein1.4e-2858.89Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPAD
        M+F GT  KC ACDKTVY++D LT +   YHK+CFRC HC GTL +SNY+S +GVLYC+PHF+QLFK +G+  K+F+     GK EKP D
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPAD

AT3G61230.1 GATA type zinc finger transcription factor family protein3.5e-2755.91Show/hide
Query:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEVA
        AF GTT KC ACDKTVY++D +T +   YHK+CFRC HCNGTL + NY+S +GVLYC+ HF+QLFK +G+  K+F+     GK EK  D+  A
Subjt:  AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAGACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGTTG
TCATCACTGCAATGGAACCCTCAAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGTTTAGACA
AAAGCTTCGAAGGAACACCAAAGATTGGGAAGCCGGAGAAACCGGCTGATTCTGAGGTAGCTAATTAA
mRNA sequenceShow/hide mRNA sequence
CAGTGAAAAGGAAAAGGGGGAAAGAAAAGAAAAAAAATCTAAGAGACAAAGGGGTGGTTGAGTTGGGTTGGGTTGGGTGCTTGCAAGTTCAGACAAATTGATTACCATTT
TTACCCTCCAACTTTAGATTTGTCTACTTGAATCTCTCTACACACACCCATATTTTTTTCACCCATTGCCAATTCCTATCTCTCTGCCCTTTCTTTCTCCCCTTCCTTAT
CTCCTTCACATTGTCTTCTTCTTCCTCCTCTTTCCCTTTACACACCGACTCAAATTTCAACACAAAACACACTGACATTTTTCTTCTGCATCTGAGTTTATTAAAAACCC
CTTTTGCAACAGCCATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAGACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAA
GCTTGCTTCCGTTGTCATCACTGCAATGGAACCCTCAAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAAC
TGGAAGTTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAGCCGGAGAAACCGGCTGATTCTGAGGTAGCTAATTAATTATATTATTCTCTGTTTTGTGTTAATT
TCAACTAAGGGATTACTCAAATGCATTTGACAGAAACCAACATCGACCAAGGTTGCAAGCATGTTCGTCGGTACTAAAGACAAGTGCCTTGGCTGTAAGAACACTGTTTA
TCCAACTGAGAAGGTTTCAGTGAATGGAACTTCGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACACGAAGGTC
GACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAAAGGACCTTACACTCGTAGGGCCTTTTTTTTTAT
GTTCTCAATCAAAATATTTCTCAGCTTTCTTCCTTATTTTAGTCCTGTTTTTACGCTGTTACTCTTTTGAACTTTAGCACCATGCTGTTTGAAATTTGAACGTTATTGTA
AAACAAAAGAAGTTATCGTGTGGGTCTTCTTTGGTTTTTCCCTCTGATTTCCACTTTGGTTCGTGAATTCAAATAAACTTATAATTAAAGCC
Protein sequenceShow/hide protein sequence
MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEVAN