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Lsi04G014820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G014820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr04:22515472..22516909
RNA-Seq ExpressionLsi04G014820
SyntenyLsi04G014820
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6139964.1 hypothetical protein GIB67_011674, partial [Kingdonia uniflora]7.1e-3680.39Show/hide
Query:  VTPKEGRDF-----RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS
        +TPK+         RV  T  FEIT+YIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMM CESLETC 
Subjt:  VTPKEGRDF-----RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS

Query:  VY
        VY
Subjt:  VY

MBA0570956.1 hypothetical protein [Gossypium lobatum]2.1e-3281.82Show/hide
Query:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY
        RVW TS FEI AY+P IGHN QEHS+VLVRGGRVKDL  VRY IVRGTLD +GVKDRQQGRSS L ILIQDLYHLMM CESLETC VY
Subjt:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY

MBA0870852.1 hypothetical protein [Gossypium schwendimanii]1.6e-3281.82Show/hide
Query:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY
        RVW TS FEI AY+P IGHN Q HSVVLVRGG+VKDLP VRY IVRGTLD +GVKDRQQG SS L ILIQDLYHLMMPCESLETC VY
Subjt:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY

PHU22444.1 30S ribosomal protein S12, chloroplastic [Capsicum chinense]1.5e-3376.47Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS
        +TPK+         RV  TSGFEIT YIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRG LDAV VKD QQG SS L ILIQDLY+LMMPCESLETC 
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS

Query:  VY
        VY
Subjt:  VY

YP_009484885.1 ribosomal protein S12 [Cyamopsis tetragonoloba]4.9e-2983.72Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL

TrEMBL top hitse value%identityAlignment
A0A2G3CUN9 30S ribosomal protein S12, chloroplastic7.1e-3476.47Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS
        +TPK+         RV  TSGFEIT YIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRG LDAV VKD QQG SS L ILIQDLY+LMMPCESLETC 
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS

Query:  VY
        VY
Subjt:  VY

A0A3G1J7X1 Ribosomal protein S122.4e-2983.72Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDL

A0A7J7LBS2 Uncharacterized protein3.4e-3680.39Show/hide
Query:  VTPKEGRDF-----RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS
        +TPK+         RV  T  FEIT+YIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMM CESLETC 
Subjt:  VTPKEGRDF-----RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCS

Query:  VY
        VY
Subjt:  VY

A0A7J8N211 Uncharacterized protein1.0e-3281.82Show/hide
Query:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY
        RVW TS FEI AY+P IGHN QEHS+VLVRGGRVKDL  VRY IVRGTLD +GVKDRQQGRSS L ILIQDLYHLMM CESLETC VY
Subjt:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY

A0A7J9MIE9 Uncharacterized protein7.9e-3381.82Show/hide
Query:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY
        RVW TS FEI AY+P IGHN Q HSVVLVRGG+VKDLP VRY IVRGTLD +GVKDRQQG SS L ILIQDLYHLMMPCESLETC VY
Subjt:  RVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCSVY

SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic3.6e-2781.58Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic7.3e-2881.01Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        +TPK+         RV  TSGFEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic7.3e-2881.01Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        +TPK+         RV  TSGFEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic7.3e-2881.01Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        +TPK+         RV  TSGFEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q6YXM6 30S ribosomal protein S12, chloroplastic2.8e-2782.89Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        VTPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.4e-1359.26Show/hide
Query:  EITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +I A+IP  GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  EITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00065.1 ribosomal protein S12A2.6e-2881.58Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C2.6e-2881.58Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B2.6e-2881.58Show/hide
Query:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +TPK+         RV  TSGFEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  VTPKEGRD-----FRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein1.4e-1359.26Show/hide
Query:  EITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +I A+IP  GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  EITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGTTTAGCATTCCCCATAGCTTTAGTCCCCGTATATTTAGTGGTCGACTGCTACCCACCCTACTTATCCCAGCTCTAAAGGCAGCTACTGACTCGATAGCTCA
AGTTGAGTCGACTTCTTCGGCTTTCACTGGATTCACTACTCTAAGTGAAGGAACCCGAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATAAAGCAAG
GGGAAGAAAATCAGCGATGCCATTTAGCTGTTGGAATGTCAAATTCAACTAAACTACACAACAATGGGGTGGCCAAGAACAACTACGGTAGAGCGGTTTATAGGAAGAAA
CTTCTCATATCGTTGGAGAGGTTCTTTGTGCCAAAGCCATTTATAAGCCCTCAAGTAACCCCGAAAGAGGGAAGAGATTTTCGAGTATGGGAAACCTCTGGATTTGAAAT
CACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAG
GAACTCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAA
ACATGTTCAGTGTATGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGTTTAGCATTCCCCATAGCTTTAGTCCCCGTATATTTAGTGGTCGACTGCTACCCACCCTACTTATCCCAGCTCTAAAGGCAGCTACTGACTCGATAGCTCA
AGTTGAGTCGACTTCTTCGGCTTTCACTGGATTCACTACTCTAAGTGAAGGAACCCGAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATAAAGCAAG
GGGAAGAAAATCAGCGATGCCATTTAGCTGTTGGAATGTCAAATTCAACTAAACTACACAACAATGGGGTGGCCAAGAACAACTACGGTAGAGCGGTTTATAGGAAGAAA
CTTCTCATATCGTTGGAGAGGTTCTTTGTGCCAAAGCCATTTATAAGCCCTCAAGTAACCCCGAAAGAGGGAAGAGATTTTCGAGTATGGGAAACCTCTGGATTTGAAAT
CACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAG
GAACTCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAA
ACATGTTCAGTGTATGACTAA
Protein sequenceShow/hide protein sequence
MVMFSIPHSFSPRIFSGRLLPTLLIPALKAATDSIAQVESTSSAFTGFTTLSEGTREVRRRSTVKERKKQIKQGEENQRCHLAVGMSNSTKLHNNGVAKNNYGRAVYRKK
LLISLERFFVPKPFISPQVTPKEGRDFRVWETSGFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLE
TCSVYD