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Lsi04G014980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G014980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S29
Genome locationchr04:22664141..22669831
RNA-Seq ExpressionLsi04G014980
SyntenyLsi04G014980
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2309651.1 hypothetical protein GH714_004459 [Hevea brasiliensis]1.1e-1635.78Show/hide
Query:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGHN
        +WWS++ SP       V   L F   GL+KL  DV+ACEYEDV VMWEMLKRNET+                                            
Subjt:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGHN

Query:  VTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEI
              +A L+ R           +++R  W    C                          F   S    RVCGNPHGLIRKYGLMCCRQCFRSNAKEI
Subjt:  VTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEI

Query:  GFIK
        GFIK
Subjt:  GFIK

KAF5740625.1 hypothetical protein HS088_TW11G00702 [Tripterygium wilfordii]1.5e-2438.16Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGH
        M+WW KM+ P+RR    V   L  R++GL+KL  DV+ACEYED+ +MWEML+++ET+            L  S G    R I         KS TM   +
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGH

Query:  NVTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKE
           SH  S                                              GP  R             RVCGNPHG+IRKYGLMCCRQCFRSNAKE
Subjt:  NVTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKE

Query:  IGFIKYR
        IGFIKYR
Subjt:  IGFIKYR

KAG6591414.1 hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia]6.1e-1877.19Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
        M WWS+M+SPLRRF+FR+A+RLGFRKRGL+KLGRDV+ACEY DV VMWEM+KRNE +
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD

KAG6608437.1 hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2085.96Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
        MEWW K++SPLRRFT RVA+RLG+RKRGL+KLGRDVKACEYEDVHVMWEMLKRNET+
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD

KAG7024293.1 hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-1877.19Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
        M WWS+M+SPLRRF+FR+A+RLGFRKRGL+KLGRDV+ACEY DV VMWEM+KRNE +
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD

TrEMBL top hitse value%identityAlignment
A0A0A0L522 Uncharacterized protein2.0e-2292.98Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
        MEWW KMS+PLR FTFRVA RLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD

A0A314XN04 40S ribosomal protein S29 isoform X11.4e-1559.09Show/hide
Query:  KRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGI-LLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        +R SK  +Q   +W I T GI I RT  LV V D +  D   +  LFV +     RVCGNPHGLIRKY LMCCRQCFRSNAKEIGFIK
Subjt:  KRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGI-LLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A4Y7JSR9 Uncharacterized protein2.3e-1571.93Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD
        MEWW+KM  PLRR  F +AARLG RK GL+KL  DV+ CEYEDVHVMWEMLKR+ET+
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETD

A0A6A6M7F0 Uncharacterized protein5.5e-1735.78Show/hide
Query:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGHN
        +WWS++ SP       V   L F   GL+KL  DV+ACEYEDV VMWEMLKRNET+                                            
Subjt:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGHN

Query:  VTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEI
              +A L+ R           +++R  W    C                          F   S    RVCGNPHGLIRKYGLMCCRQCFRSNAKEI
Subjt:  VTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEI

Query:  GFIK
        GFIK
Subjt:  GFIK

A0A7J7D2Q4 Uncharacterized protein7.2e-2538.16Show/hide
Query:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGH
        M+WW KM+ P+RR    V   L  R++GL+KL  DV+ACEYED+ +MWEML+++ET+            L  S G    R I         KS TM   +
Subjt:  MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGH

Query:  NVTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKE
           SH  S                                              GP  R             RVCGNPHG+IRKYGLMCCRQCFRSNAKE
Subjt:  NVTSHQGSANLTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKE

Query:  IGFIKYR
        IGFIKYR
Subjt:  IGFIKYR

SwissProt top hitse value%identityAlignment
P62273 40S ribosomal protein S292.7e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

P62276 40S ribosomal protein S292.7e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S292.7e-1391.43Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Q680P8 40S ribosomal protein S292.1e-1394.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Q7XYB0 40S ribosomal protein S294.1e-0971.43Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        ++CGN HGLIRKY +  CRQCFR  AK+IGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.5e-1494.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.5e-1494.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.5e-1494.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

AT5G43150.1 unknown protein1.1e-1251.85Show/hide
Query:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNE
        EWW+ M+ P RR   R   R+GFR  GL++L  DV +CEYED+H+MW +L +NE
Subjt:  EWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGGTGGAGCAAGATGTCTTCTCCCTTGCGAAGATTTACCTTCAGAGTCGCCGCTCGTCTCGGATTTCGCAAACGCGGGCTAGTGAAACTTGGGCGAGATGTGAA
GGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCCGACGCCGAAAAAGGAGATCGATGTGGAATATCTTTTGGTGGGCTCGA
TCGGCTCCATGCATTGGCGGAAGATTCTGAAGAATGAGTCACCACTCTTGGTTAAATCCAACACCATGAATTTGGGTCATAATGTAACCAGCCACCAGGGTTCTGCAAAT
TTAACGAAGCGGCTGTCAGAGCTGAAAAGGGTTTCTAAGGTGATCGACCAACGAAGAAGACGATGGGTCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCT
GGTTCTCGTACTTGATCTTATTGGCCCTGATTTCAGGGGGATTCTCTTATTTGTTGTCGTATCTGGCATTCGATTTCGAGTCTGCGGAAACCCCCATGGATTGATCCGCA
AGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATTAAGTACCGCTGA
mRNA sequenceShow/hide mRNA sequence
AGATCGAGTATGAGCGATTAGTACAATGGGTCCCACTTGTAGATTCTGAAATTAGGTCAATATATTTTTGTGATATAGTTCTTTTAATTACTCGATGTCGAAAATATTTA
TTTCAAAATGAAAAATGAATATTATAAGTCGTGTATTCATAATAAGGAATTAAAAACAAAAATATCTTTTTACTAAGCTTTGCAGAGTGAGTGCCACGTAGTAGCACTCT
CCTGAGTACACGAGGATCCCCCAGCCCCCAGGGCCCACTATACTACAATGAGCGTGAACGTCACGCGAACGCTTAGAGGGATCGTGACTACGACGCGCCTTCATTTTTAA
TAGGAAAGACCTGAATTCACGAAGTTTTGTAACGGAACGGAGAGTACGTGTACTCCACGAAGCGATAGATGGGTATGGCGTTTTCCAAAAAAAGAAAAAAAATAAATTAG
ATTAGCCAACGAGAAAGTCCCACGTGGAAGGGCAAAATCAGAATCAAAGAGGCCGTCATGATCAACGCAACGGTCGCATTGGAATCGGTGAAAGCCGGTTCTGGAGAACG
AGATTGGGCGGAAAGCGGTTAATATTTCGAATTACGTTCCACTGTTGCTAAGAATACTCTTTAGAGGAGGGAGACGAGAGAGCGAGTTTCGCCAAGTGAATTTTCTGTTT
ATTCAGATTTGAGATCTTAGCGTCTCCTCTCTCTTTAAACTCTTCTCTCACTGGAGTAGAAGCAGAGAACTCGAGAATGGAATGGTGGAGCAAGATGTCTTCTCCCTTGC
GAAGATTTACCTTCAGAGTCGCCGCTCGTCTCGGATTTCGCAAACGCGGGCTAGTGAAACTTGGGCGAGATGTGAAGGCATGTGAATACGAGGACGTGCACGTGATGTGG
GAGATGCTGAAGAGAAACGAAACGGATCCGACGCCGAAAAAGGAGATCGATGTGGAATATCTTTTGGTGGGCTCGATCGGCTCCATGCATTGGCGGAAGATTCTGAAGAA
TGAGTCACCACTCTTGGTTAAATCCAACACCATGAATTTGGGTCATAATGTAACCAGCCACCAGGGTTCTGCAAATTTAACGAAGCGGCTGTCAGAGCTGAAAAGGGTTT
CTAAGGTGATCGACCAACGAAGAAGACGATGGGTCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGATCTTATTGGCCCTGATTTC
AGGGGGATTCTCTTATTTGTTGTCGTATCTGGCATTCGATTTCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCG
TAGTAATGCCAAAGAAATTGGCTTCATTAAGTACCGCTGAGAATGGAGCTCTTGGTCTACAGATGTTGCAGACATGAGCATGCTGGTTTACTTGCTTTTTCTTGGTTTAG
TCTATTTATAATTAAATGAATTAATTTCAAACAATTACGATCAAAAGAATTATGAGTTGCACTTTACAACCAATCAGGCTTGGGAATTATATGAATTTGGGTCATTGAAA
GTTTAGGAGAATGCAGCTGTGGCTATATTCTTTTAATGCACTTTATGGCTGTTGTTATATTTATTCAATGTGAATATATGAAAATTTGCGTCTTATAATTGGTTTATTTA
ACAT
Protein sequenceShow/hide protein sequence
MEWWSKMSSPLRRFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDPTPKKEIDVEYLLVGSIGSMHWRKILKNESPLLVKSNTMNLGHNVTSHQGSAN
LTKRLSELKRVSKVIDQRRRRWVIQTCGIHIQRTMDLVLVLDLIGPDFRGILLFVVVSGIRFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR