; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G015000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1
Genome locationchr04:22672024..22675912
RNA-Seq ExpressionLsi04G015000
SyntenyLsi04G015000
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141282.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus]1.0e-3465.67Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGMEFD KDQNQS D+KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
XP_008452624.1 PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucumis melo]3.0e-3465.67Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGMEFD KDQNQS DIKDSKD SR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
XP_022159826.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica charantia]2.6e-3363.43Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFG+GWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQG+EFD+KDQNQS D KDS DLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
XP_022937244.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata]3.4e-3363.43Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFG+GCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTA+G
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGME D KDQNQS D KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
XP_022977146.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima]7.5e-3362.69Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFG+GCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTA+G
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGME D KDQNQ+ D KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
TrEMBL top hitse value%identityAlignment
A0A0A0L0F8 Uncharacterized protein5.1e-3565.67Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGMEFD KDQNQS D+KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
A0A1S3BVF8 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X11.5e-3465.67Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGMEFD KDQNQS DIKDSKD SR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
A0A6J1E543 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X11.2e-3363.43Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFGVGCGFG+GWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQG+EFD+KDQNQS D KDS DLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
A0A6J1F9U6 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X11.6e-3363.43Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFG+GCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTA+G
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGME D KDQNQS D KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
A0A6J1IHM9 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X13.6e-3362.69Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVLTNFNG GVGFGFG+GCGFGIGWGFG                                          GMPLNFLGLGAGGGCGVGLGLGWGFGTA+G
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
        SKYRSSRMIFQGME D KDQNQ+ D KDSKDLSR
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSR
SwissProt top hitse value%identityAlignment
Q8VY77 Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic1.9e-2348.09Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVL++F G GVGFGFGVGCGFG+GWGFG                                          GMP+N LG+GAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD
        S YRSSR+ FQG+E +  D+ +      SK+
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein1.4e-2448.09Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVL++F G GVGFGFGVGCGFG+GWGFG                                          GMP+N LG+GAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD
        S YRSSR+ FQG+E +  D+ +      SK+
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD
AT1G27695.2 glycine-rich protein1.4e-2448.09Show/hide
Query:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG
        MVL++F G GVGFGFGVGCGFG+GWGFG                                          GMP+N LG+GAGGGCGVGLGLGWGFGTAFG
Subjt:  MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFG

Query:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD
        S YRSSR+ FQG+E +  D+ +      SK+
Subjt:  SKYRSSRMIFQGMEFDRKDQNQSCDIKDSKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTGACCAACTTCAATGGAACTGGCGTTGGATTCGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGACAAGAATCTTGACGGGTTTGAAAC
TAAGCTCTGTGCCTCTTTTGCAACTCTCATTTTCGCTGTTTGGGATATTAGAAGAGTCTGGAACTTTATGTTGTTTATCTCTCCTCGTTCTTTATTGGAAGGAATGCCTT
TGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCGAGGATGATATTT
CAGGGAATGGAATTTGACAGGAAGGATCAAAATCAGAGTTGTGATATCAAGGACTCAAAAGATTTATCCAGAAAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
AAACCATATCTTAAGTTAGTCTAAAGGTAAAAAAGGATCATGAGTTTAATAAAAAGATTTCAATCTATATTGACCACCTACTTAGGATTTAGGATTTATATCTTATAAGT
TTTCTTGATACTCAAATGCAATTGTCCTTGATATTAATCAAAAGTGTATATAAGTTGGCTCGAACACTGATAAATATTTATGTGAACCCTAAAATTTAAGCTAGCTTATA
TTTTTATTCTAACAGCCTGTGTAATTTCAATTTGTCTATAAACTTCGTTAACTGTTTCCAAAATAACAAGTGGGCCAAAAGCCTTCGTATTGATCGTTTTCCTTTGCAGG
CCATCTTAAACAAAAGCCTATCTCACTTTTGCGGGTATTGTGGTAGACTGCGCTCGATTGGCGACTGAGTTCATTCCTGATTCCCCTCGTTATCAGCTTCTCCGTTTGTG
GCGTCTCCGCTGCGAGCAATGGTGCTGACCAACTTCAATGGAACTGGCGTTGGATTCGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGACAAGAA
TCTTGACGGGTTTGAAACTAAGCTCTGTGCCTCTTTTGCAACTCTCATTTTCGCTGTTTGGGATATTAGAAGAGTCTGGAACTTTATGTTGTTTATCTCTCCTCGTTCTT
TATTGGAAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGG
TCCTCGAGGATGATATTTCAGGGAATGGAATTTGACAGGAAGGATCAAAATCAGAGTTGTGATATCAAGGACTCAAAAGATTTATCCAGAAAAGTTTGAGCTTAATCTCT
CCCTTATTATTGGCTAGTTTAAGTCTTCAGCATTCTAAGAGTTTTTTAAAAATATTTTGAACCCTTTTTGGATGGAATTGAGATAACATCTGATCGTATACTTGTACCTT
CATCAGATTGTATAAAAGTTACTTTGCTTTTGTCGATCAATTTTTCAAAATACTAGATAAGTTTATATCATAAGGGCATCTTAACCGTAAGAAGGTCACTCACGATCTCT
GCACCAATCTTCATGCGGATAGCGCTTTCAACCAGAATCACTTTGCACACATCATGGTTTCAAAAGCTTGTCATGTGATCCTTGGCCGTTTCTGTGTTCATTCTATTGCT
TTCTTATATATGTGAAGCGTTATTCTCTCTTCCAGTCGTGCAGTTGCATTTAGTTGGCGAATAGACATGACAGGAAACTATTTGGTTTCACGGGGGCTTCTCCTTTTCTG
TCTTGTCCTCTTAAATAAGGTTCTTGACGCTGCAAGTACAAGAAAATTGATGCTTGGGAGTGACGTGATTACTCATGAAATAAGAAATGGCCTTCCAGATGACACAAACG
TTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGGAATATCAGCTGGTGGTGGCTCTGGCGTCGGGACTAAGGGAGGCTTTGGCTCAGGTTACGGT
GGTTCTGGACCTGGTGGATTCGGTCCGGGCATTGGTTCTGGCTCGGATGGTGGCTTTGGACCTGGAATTGGGTATGGCTCAGGTTCAGGCTTTGGTGGTGTAGGTGGCGG
ATTCGGTGGTTCAGGTGGCATCGGAGGTATCGTGGGTAGCGGTGGCGGCGGACTAGGCAGTTCAGGTGGTATTGTGGGTGGCAGTGGTGGTGGAGTAAGTGGGTCTGGAG
GCATGGGTGGTGGTGGTTATGGTGGGTCGGGAGGCATGGGTGGCGGCGGCAGCGATGGCGTTTATGGTGGCAACATGAATAATCCTTAATCGATGAGCACCAACGCTATA
TCGAGCATAATTCATTGCTAAGATGTTTAACAAGACAAGTTTCTTAATTAAGGAAGGAGACAAATAAAGATACTTGTTCCTCTTTATGTTTTTATAATTAATGAAATTGA
TAAGAGAACACTACCTCTTTTTGTAGTCTTAAATTTGCTCGATATAAAAGTAAAACTTTTTCGATGTTAGGAAGATGGCACCTAATGAAATTGTATACACCATCTTAGAA
AGCATGTCTTGTCAGAATTCTTCACTAAGACTTACCATTTACTAAAATAATTGTCCATTTTTAAGTCCACCTCAAGAATTTCATTGCCTTAAAATGTCCTTTTAACTGGC
AAGAAATTTCACTGTCCAATCTTAAATAGGTAAATGGAGAATATGGAGTGGTTGTTTGAAACTGAATTCCATGGACCAAGAAGGTTAGC
Protein sequenceShow/hide protein sequence
MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIF
QGMEFDRKDQNQSCDIKDSKDLSRKV