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Lsi04G015130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr04:22756587..22756877
RNA-Seq ExpressionLsi04G015130
SyntenyLsi04G015130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064422.1 hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa]1.4e-1774.32Show/hide
Query:  MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        M+ASTHFLIVEGRVL+S  EKLA  +EKME VK ++     MD+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Subjt:  MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

KAG6591405.1 hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia]3.0e-2879.17Show/hide
Query:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        MA+E+SA AS KRLCFVVGVLLMVAS HFL VEGR L+S SEKLADG+EKM  V+A IG+AA+ D+VNSLSSSS S FRSLSFVLASGPSKKGPGH
Subjt:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

KAG6608443.1 hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia]4.1e-1764.58Show/hide
Query:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        MA+EL   AS +RLCFVVGVLLMV  T F+ VEGRVLK     +AD     E V   IGM AYM  ++SLS SSRSAF SLSFVL+SGPSKKGPGH
Subjt:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

KGN55240.1 hypothetical protein Csa_012906 [Cucumis sativus]1.0e-2371.74Show/hide
Query:  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        ++ K S K +CFVVGVLLM+ASTHFLIVEGRVL+S  EKLAD +E+ME VK I+     +D+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Subjt:  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

PNT49302.1 hypothetical protein POPTR_002G122200 [Populus trichocarpa]7.7e-0843.3Show/hide
Query:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        M I    ++S K L FV+G++++V ST    V  R L+S NS  +A G ++++  +  +GMA+++  V+S +SSSR + RSL F +ASGPSK+GPGH
Subjt:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

TrEMBL top hitse value%identityAlignment
A0A0A0KZV6 Uncharacterized protein4.8e-2471.74Show/hide
Query:  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        ++ K S K +CFVVGVLLM+ASTHFLIVEGRVL+S  EKLAD +E+ME VK I+     +D+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Subjt:  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

A0A2P5EGP5 Transmembrane protein2.4e-0743.56Show/hide
Query:  AKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKL---ADGEEKMEDVKAIIGMAAYMDKVN--------SLSSSSRSAFRSLSFVLASGPSKKGPG
        +K S K LCFV+G++L++ +  F   + R L+S        A G E+ E  +  +GMA++    N        S SSSSR   RSLSF LASGPSKKGPG
Subjt:  AKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKL---ADGEEKMEDVKAIIGMAAYMDKVN--------SLSSSSRSAFRSLSFVLASGPSKKGPG

Query:  H
        H
Subjt:  H

A0A5B7BBR4 Uncharacterized protein (Fragment)6.3e-0849.43Show/hide
Query:  SAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        S K LCFV+GV+++V  T F +V  R L+S  E    G E+    +    M  +    N+ SSSSRSA RSL F LASGPSKKGPGH
Subjt:  SAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

A0A5D3D9C4 Uncharacterized protein6.8e-1874.32Show/hide
Query:  MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        M+ASTHFLIVEGRVL+S  EKLA  +EKME VK ++     MD+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Subjt:  MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

U7DV09 Uncharacterized protein3.7e-0843.3Show/hide
Query:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
        M I    ++S K L FV+G++++V ST    V  R L+S NS  +A G ++++  +  +GMA+++  V+S +SSSR + RSL F +ASGPSK+GPGH
Subjt:  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATAGAATTGAGCGCCAAAGCATCAGCCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACCCATTTTCTAATTGTTGAAGGCAGAGTTTT
AAAATCAAATTCAGAGAAGTTAGCTGATGGTGAGGAGAAAATGGAAGATGTGAAGGCAATAATTGGAATGGCGGCTTATATGGACAAAGTTAATTCATTAAGTAGCAGTA
GTCGCAGTGCCTTTCGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAGGGTCCTGGCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATAGAATTGAGCGCCAAAGCATCAGCCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACCCATTTTCTAATTGTTGAAGGCAGAGTTTT
AAAATCAAATTCAGAGAAGTTAGCTGATGGTGAGGAGAAAATGGAAGATGTGAAGGCAATAATTGGAATGGCGGCTTATATGGACAAAGTTAATTCATTAAGTAGCAGTA
GTCGCAGTGCCTTTCGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAGGGTCCTGGCCATTAA
Protein sequenceShow/hide protein sequence
MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH