CuGenDBv2

Gene ID	Lsi04G015140
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein GID2-like
Genome location	chr04:22773692..22774216
RNA-Seq Expression	Lsi04G015140
Synteny	Lsi04G015140
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

2.5e-81

84.29

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

2.9e-82

84.82

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRVVPDG GDRKMGKKPK A+TQD     G  D SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        SVVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+              SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022937325.1 F-box protein GID2-like [Cucurbita moschata]

2.7e-80

86.59

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LALGGFRRLHSLFIWPLTKPQSSSS+     SSS+ WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  LALGGFRRLHSLFIWPLTKPQSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]

1.6e-80

85.71

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LALGGFRRLHSLFIWPLTKPQSSSS+SSSTS        WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  LALGGFRRLHSLFIWPLTKPQSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

4.4e-86

89.01

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRVVPDGDGDRK GKKP+ A+TQDCAG GD SD+TGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQSSS---------STSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        LALGGFRRLHSLFIWPLTKPQSSS         S+SSS SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  LALGGFRRLHSLFIWPLTKPQSSS---------STSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

1.4e-82

84.82

Show/hide

Query:  MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRVVPDG GDRKMGKKPK A+TQD     G  D SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        SVVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+              SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

1.2e-81

84.29

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

1.2e-81

84.29

Show/hide

Query:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1FA22 F-box protein GID2-like

1.3e-80

86.59

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LALGGFRRLHSLFIWPLTKPQSSSS+     SSS+ WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  LALGGFRRLHSLFIWPLTKPQSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1ILD7 F-box protein GID2-like

7.8e-81

85.71

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Query:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LALGGFRRLHSLFIWPLTKPQSSSS+SSSTS        WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  LALGGFRRLHSLFIWPLTKPQSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

9.6e-28

47.22

Show/hide

Query:  AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSST
        AGEG   ++    +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL         
Subjt:  AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSST

Query:  SSSTSW--SPFPAMMGSK-PPARWGKDEVHLSLSLLSIRYYEKM
             W  +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  SSSTSW--SPFPAMMGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

3.7e-11

31.01

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAM
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                     +
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAM

Query:  MGSKPPARWGKDEVHLSLSLLSIRYYEKM
        +   P   W +D++ LSLSL  + YYE++
Subjt:  MGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

4.2e-47

55.68

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Query:  MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR   D    GD   +  KK K+ +           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QL
Subjt:  MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSL++WPL+KP                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.6e-04

Show/hide

Query:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

3.0e-48

55.68

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Query:  MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR   D    GD   +  KK K+ +           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QL
Subjt:  MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSL++WPL+KP                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

2.6e-12

31.01

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAM
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                     +
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAM

Query:  MGSKPPARWGKDEVHLSLSLLSIRYYEKM
        +   P   W +D++ LSLSL  + YYE++
Subjt:  MGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

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ATGAAGCGAGTTGTTCCAGATGGGGATGGGGATCGGAAGATGGGGAAGAAACCTAAGGCAGCGGACACCCAAGATTGTGCCGGAGAAGGAGATTCCTCCGACAAGACTGG
ATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCAGGACTTTGGCCATGGCGGCATGTGTGAGCAAGCAATGGCACAAAACCGCCGAAG
ATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCAC
TCCCTTTTCATCTGGCCTCTTACCAAGCCCCAATCCTCCTCCTCCACATCTTCGTCGACATCTTGGTCTCCGTTTCCAGCGATGATGGGATCGAAGCCACCAGCCCGGTG
GGGGAAAGATGAGGTCCATCTCTCACTCTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

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Protein sequence

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MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLH
SLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Lsi04G015140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome