CuGenDBv2

Gene ID	Lsi04G015210
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein DCL homolog, chloroplastic-like
Genome location	chr04:22849435..22851751
RNA-Seq Expression	Lsi04G015210
Synteny	Lsi04G015210
Gene Ontology terms	NA
InterPro domains	IPR044673 - Protein DCL-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608449.1 Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.8e-56

65.24

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLCTGIVQVTRRSCCTA  ASTPP G L+SAENTTSVLSA++PPKY RWDE GYRKWK QEE ILSDI+PVIS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

KAG7037785.1 Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.8e-56

65.24

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLCTGIVQVTRRSCCTA  ASTPP G L+SAENTTSVLSA++PPKY RWDE GYRKWK QEE ILSDI+PVIS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

XP_022135338.1 protein DCL, chloroplastic isoform X1 [Momordica charantia]

6.2e-57

65.78

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTA AA TPPDG+LTSAEN TSVLS+S+PPKY RWDE  YRKWK+QEE +L+DIEP+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLTS DERIVV+RLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

XP_022135348.1 uncharacterized protein LOC111007322 isoform X2 [Momordica charantia]

1.8e-56

65.59

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTA AA TPPDG+LTSAEN TSVLS+S+PPKY RWDE  YRKWK+QEE +L+DIEP+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM
        SN                                             RYVDG RLTS DERIVV+RLLAHHPH+EDKIGCGLESIM
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM

XP_022982288.1 protein DCL homolog, chloroplastic-like isoform X1 [Cucurbita maxima]

5.8e-55

63.64

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLCTGI+QVTRRSCCTA  ASTPP G L+SAENTTSVLS ++PPKY RWDE GYRKWK QEE ILSDI+P+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C4J4 protein DCL, chloroplastic isoform X1

3.0e-57

65.78

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTA AA TPPDG+LTSAEN TSVLS+S+PPKY RWDE  YRKWK+QEE +L+DIEP+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLTS DERIVV+RLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

A0A6J1C4K2 uncharacterized protein LOC111007322 isoform X2

8.7e-57

65.59

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTA AA TPPDG+LTSAEN TSVLS+S+PPKY RWDE  YRKWK+QEE +L+DIEP+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM
        SN                                             RYVDG RLTS DERIVV+RLLAHHPH+EDKIGCGLESIM
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM

A0A6J1FNQ4 protein DCL homolog, chloroplastic-like

4.8e-55

63.64

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLC GIVQVTRRSCCTA  ASTPP G L+SAENTTSVLSA++PPKY RW+E GYRKWK QEE ILSDI+P+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

A0A6J1J443 protein DCL, chloroplastic-like isoform X2

8.1e-55

63.44

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLCTGI+QVTRRSCCTA  ASTPP G L+SAENTTSVLS ++PPKY RWDE GYRKWK QEE ILSDI+P+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIM
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM

A0A6J1J4G4 protein DCL homolog, chloroplastic-like isoform X1

2.8e-55

63.64

Show/hide

Query:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH
        M ASLLLRGHPL+RLGLR+RGLCTGI+QVTRRSCCTA  ASTPP G L+SAENTTSVLS ++PPKY RWDE GYRKWK QEE ILSDI+P+IS TKEILH
Subjt:  MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILH

Query:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        SN                                             RYVDG RLT EDE+IVVDRLLAHHPH+EDKIGCGLESIMV
Subjt:  SNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

SwissProt top hits

e value

%identity

Alignment

Q9C642 Protein DCL homolog, chloroplastic

9.7e-05

47.5

Show/hide

Query:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        +Y +  RL+ E ER +++ LL +HP  E KIGCG++ IMV
Subjt:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

Arabidopsis top hits

e value

%identity

Alignment

AT1G45230.1 Protein of unknown function (DUF3223)

6.9e-06

47.5

Show/hide

Query:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        +Y +  RL+ E ER +++ LL +HP  E KIGCG++ IMV
Subjt:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

AT1G45230.2 Protein of unknown function (DUF3223)

6.9e-06

47.5

Show/hide

Query:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV
        +Y +  RL+ E ER +++ LL +HP  E KIGCG++ IMV
Subjt:  RYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMV

AT3G46630.1 Protein of unknown function (DUF3223)

2.7e-18

34.83

Show/hide

Query:  MAASLLLRGHPLLRLG-LRHRG----LCTGIVQVTRRSCCTAA---------AASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILS
        M + LLLR  PLLR G L HR     +  GI+   RR  C+ A          + +P +G   +A N TS +  +      R+++  YRKWK  E  IL 
Subjt:  MAASLLLRGHPLLRLG-LRHRG----LCTGIVQVTRRSCCTAA---------AASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILS

Query:  DIEPVISFTKEILHSNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM
        DIEP+    KEILHS+                                             RY+DG RL  EDE+IV+++LL +HP+S+DKIGCGL+ IM
Subjt:  DIEPVISFTKEILHSNRSSLAGRWEWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIM

Query:  V
        V
Subjt:  V

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTTCTTTGCTACTCAGGGGGCATCCTCTCCTGCGGTTAGGGCTTAGGCACCGCGGTCTGTGTACTGGGATTGTGCAAGTGACTCGCCGGTCTTGCTGCACTGC
AGCGGCGGCGTCTACTCCACCGGACGGCGACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCAGTGAGCCACCAAAGTACCTAAGATGGGACGAGTCTGGTT
ATCGGAAGTGGAAGGAACAGGAAGAGATAATTCTCAGCGACATCGAGCCTGTCATATCCTTCACTAAAGAGATCCTCCACTCAAATAGAAGTTCATTAGCGGGTAGATGG
GAATGGGAAAGTAACGTGACAAGTAAATATGAAGCGGACAATTATAACTTCTTGATAACTGATCACCAAGGAAGTGGGGCCCTTGGGGCAATTCCATTAATGATTGATAT
TAGGTATGTGGATGGGGGGCGATTGACATCTGAGGATGAGAGAATTGTGGTAGACAGGCTTCTAGCGCATCATCCACATTCTGAAGATAAAATTGGATGTGGCCTTGAAT
CCATTATGGTATGCTTTTTTCTAGACTAA

mRNA sequence

Show/hide mRNA sequence

ATTTCCTTTTCCTTTTTTAAAAATACGTGCATGAAGCTAAGTCTACTTAACAAATCCATGTTTTAAAAAGAAAAAGACCAAAATTAAAAAGATAAAGATTGAGTAGGAAA
GTAATTACTTTCCCAATCAATTTCACCTTCATCCATCGCAACTTGTTAATGATTTACATTGAGATAAATATTTTCATTTGCTAGATAAGTTTGTAAAATATTAATAGCCA
GCTGTCAATTCGTTTGGAATATGGAAGAAGTGGGCCTTCAACATTGGGCCAGTCGAAAATCATGAGGAATTGCTGTTGTAGACCCATACGGCCCAACGAACAGCCCATGA
AGCCCAACAACCCATTCGTGAAGCAGAGCCGGATCGTGTAGTCGTCATCCCAAAAGACGAAGGCAGATTCGTCCAGACACTTCATGCTGAGCACCGAGCTGCTCTCCGTC
TCCACAACAACATTTGATCCTCATGGCTGCTTCTTTGCTACTCAGGGGGCATCCTCTCCTGCGGTTAGGGCTTAGGCACCGCGGTCTGTGTACTGGGATTGTGCAAGTGA
CTCGCCGGTCTTGCTGCACTGCAGCGGCGGCGTCTACTCCACCGGACGGCGACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCAGTGAGCCACCAAAGTAC
CTAAGATGGGACGAGTCTGGTTATCGGAAGTGGAAGGAACAGGAAGAGATAATTCTCAGCGACATCGAGCCTGTCATATCCTTCACTAAAGAGATCCTCCACTCAAATAG
AAGTTCATTAGCGGGTAGATGGGAATGGGAAAGTAACGTGACAAGTAAATATGAAGCGGACAATTATAACTTCTTGATAACTGATCACCAAGGAAGTGGGGCCCTTGGGG
CAATTCCATTAATGATTGATATTAGGTATGTGGATGGGGGGCGATTGACATCTGAGGATGAGAGAATTGTGGTAGACAGGCTTCTAGCGCATCATCCACATTCTGAAGAT
AAAATTGGATGTGGCCTTGAATCCATTATGGTATGCTTTTTTCTAGACTAA

Protein sequence

Show/hide protein sequence

MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTAAAASTPPDGDLTSAENTTSVLSASEPPKYLRWDESGYRKWKEQEEIILSDIEPVISFTKEILHSNRSSLAGRW
EWESNVTSKYEADNYNFLITDHQGSGALGAIPLMIDIRYVDGGRLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMVCFFLD

Lsi04G015210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome