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Lsi04G015690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncalcium-binding protein CML39-like
Genome locationchr04:23248157..23248453
RNA-Seq ExpressionLsi04G015690
SyntenyLsi04G015690
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064378.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]2.6e-3587.5Show/hide
Query:  KTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        K+ + AVSSESAYSAKELR+IF+QMDTNEDGGLGLFEIKNALK+LDAEMPVHLA+ ALC+ADRNRDGKLGEEEIDQFVKYMMS+GYVV
Subjt:  KTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

KAG6608479.1 hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3275.51Show/hide
Query:  MSLFGHKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        MS +G     K+KA A  SES YSAKELREIF+QMDTNEDGGLGLFEIK ALK+LDAE PVHLAFKALC +DRNRDGKLG +EID+F+KY+MS+GYVV
Subjt:  MSLFGHKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

KAG7024250.1 hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-3282.14Show/hide
Query:  PAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        P ++S+SAYS KEL+EIF QMDTNEDGGLGLFEIKNALK+LDAE P+HLA+KALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  PAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

KAG7037807.1 hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3275.51Show/hide
Query:  MSLFGHKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        MS +G     K+KA A  SES YSAKELREIF+QMDTNEDGGLGLFEIK ALK+LDAE PVHLAFKALC +DRNRDGKLG +EID+F+KY+MS+GYVV
Subjt:  MSLFGHKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

KGN55187.1 hypothetical protein Csa_012728 [Cucumis sativus]4.7e-3788.04Show/hide
Query:  KPKTK--APAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        +PKTK  +P VSSESAYSAKELR+IF+QMDTNEDGGLGLFEIKNALK+LDAEMPVHLA+ ALCHADRNRDGKLGEEEIDQFVKYMMS+GYVV
Subjt:  KPKTK--APAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

TrEMBL top hitse value%identityAlignment
A0A0A0L3J7 Uncharacterized protein2.3e-3788.04Show/hide
Query:  KPKTK--APAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        +PKTK  +P VSSESAYSAKELR+IF+QMDTNEDGGLGLFEIKNALK+LDAEMPVHLA+ ALCHADRNRDGKLGEEEIDQFVKYMMS+GYVV
Subjt:  KPKTK--APAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

A0A5D3D9N2 Putative calcium-binding protein CML101.3e-3587.5Show/hide
Query:  KTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        K+ + AVSSESAYSAKELR+IF+QMDTNEDGGLGLFEIKNALK+LDAEMPVHLA+ ALC+ADRNRDGKLGEEEIDQFVKYMMS+GYVV
Subjt:  KTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

A0A5N6RQD5 Uncharacterized protein5.9e-0938.71Show/hide
Query:  HKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        HK K KT          Y+  +L  +F + D N DG L   E++NA   L +  P   AF+ALCHAD+N DG + E E+D  V+Y +  GY +
Subjt:  HKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

A0A6A1UYX3 Putative calcium-binding protein CML109.0e-1044.74Show/hide
Query:  YSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        Y+ ++LR +F + DTN DG L   E++NA + L +  P   AF+AL HADRN DG++ E E+D  V Y +  GY V
Subjt:  YSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

W9S022 Putative calcium-binding protein CML102.6e-0942.31Show/hide
Query:  SAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV
        + Y  ++L+ +  + DT+ DG L   E+K A K L A  P   A +ALCHAD+NRDG + EEE+   V Y   +GYV+
Subjt:  SAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTGTTCGGTCATAAAATCAAGCCGAAGACGAAGGCGCCGGCCGTCTCGTCGGAAAGTGCATACTCGGCGAAGGAACTGAGAGAGATCTTTAGCCAGATGGATAC
GAATGAAGACGGAGGATTGGGATTGTTCGAGATCAAGAACGCATTGAAGCGACTCGACGCTGAAATGCCGGTTCATCTTGCTTTCAAAGCTCTCTGTCACGCCGATCGAA
ACAGAGATGGAAAGCTTGGCGAGGAGGAGATCGATCAGTTCGTCAAGTACATGATGAGTCAAGGTTATGTTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTGTTCGGTCATAAAATCAAGCCGAAGACGAAGGCGCCGGCCGTCTCGTCGGAAAGTGCATACTCGGCGAAGGAACTGAGAGAGATCTTTAGCCAGATGGATAC
GAATGAAGACGGAGGATTGGGATTGTTCGAGATCAAGAACGCATTGAAGCGACTCGACGCTGAAATGCCGGTTCATCTTGCTTTCAAAGCTCTCTGTCACGCCGATCGAA
ACAGAGATGGAAAGCTTGGCGAGGAGGAGATCGATCAGTTCGTCAAGTACATGATGAGTCAAGGTTATGTTGTGTGA
Protein sequenceShow/hide protein sequence
MSLFGHKIKPKTKAPAVSSESAYSAKELREIFSQMDTNEDGGLGLFEIKNALKRLDAEMPVHLAFKALCHADRNRDGKLGEEEIDQFVKYMMSQGYVV