; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G015700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCalcium-binding EF-hand
Genome locationchr04:23259658..23259951
RNA-Seq ExpressionLsi04G015700
SyntenyLsi04G015700
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064377.1 Calcium-binding EF-hand [Cucumis melo var. makuwa]3.0e-4494.85Show/hide
Query:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        MAL+FVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAAD+DGDGYVTLDELD LLDYAVR +YAII
Subjt:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

KAG6591371.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]7.9e-4593.75Show/hide
Query:  ALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        A+SF+F NGVSDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDY+VRC+YAII
Subjt:  ALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

KAG6608480.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3682.42Show/hide
Query:  FSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        F +G+ DYKRCPVPF+++QLR+IFL+HD DGDGRLSRLELK+AF+SLGSNWSRFRARQ LKAADS+GDGYVTLDELD LLDYAVRC+YAII
Subjt:  FSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

KAG7029343.1 Calcium-binding protein CML37, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-1753.01Show/hide
Query:  YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI
        YKR  VPFS +QL  +F  HDGDGDG+L++ ELK AFD LGS +S FR  ++L+AAD DGDG++++ E+D+L+ YA    Y +
Subjt:  YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI

KGN55186.1 hypothetical protein Csa_012423 [Cucumis sativus]2.5e-4696.91Show/hide
Query:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAF+SLGSNWSRFRARQSLKAAD+DGDGYVTLDELDRLLDYAVRC+YAII
Subjt:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

TrEMBL top hitse value%identityAlignment
A0A0A0L4V0 Uncharacterized protein1.2e-4696.91Show/hide
Query:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAF+SLGSNWSRFRARQSLKAAD+DGDGYVTLDELDRLLDYAVRC+YAII
Subjt:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

A0A2N9FYQ0 Uncharacterized protein1.7e-1648.84Show/hide
Query:  VSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI
        V  +KR  +PF+ +QL +IF  HD DGDG+LS+ E+K AF  LGS W  +RA Q++  AD+D DGY+  +EL +L+ YA+ C Y I
Subjt:  VSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI

A0A5A7VBH2 Calcium-binding EF-hand1.5e-4494.85Show/hide
Query:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII
        MAL+FVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAAD+DGDGYVTLDELD LLDYAVR +YAII
Subjt:  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII

A0A5N6RQV2 Uncharacterized protein2.2e-1654.65Show/hide
Query:  VSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI
        V+ +K   V F+RDQL +IF  HD DGDG+LSR E+K+AF  LGS W  +RA  +L  ADSD DGYV  +EL +L+DYA++C Y I
Subjt:  VSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI

A0A7N2KRS3 Uncharacterized protein4.4e-1753.01Show/hide
Query:  YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI
        +KR  VPF+  QL +IF  HD DGDG+LSR ELK+AF  LGS W  +R  Q+L+ AD++ DGY+T DEL +L++YA+ C Y +
Subjt:  YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAI

SwissProt top hitse value%identityAlignment
A0T2M3 Polcalcin Cup a 49.9e-0640.35Show/hide
Query:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE
        +L ++F K D +GDG++S  EL     S+GS       +  ++ AD+DGDGYV+L E
Subjt:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE

O64943 Polcalcin Jun o 24.4e-0642.11Show/hide
Query:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE
        +L ++F K D +GDG++S  EL     SLGS+      +  ++ AD+DGDGYV+L E
Subjt:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE

Q6L4D4 Probable calcium-binding protein CML155.2e-0741.94Show/hide
Query:  PFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE
        P + D+   +F K D +GDGR+SR EL + F S+G   +     + ++ ADSDGDGY++L E
Subjt:  PFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDE

Q8RZB5 Probable calcium-binding protein CML104.7e-0839.71Show/hide
Query:  PVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL
        P P   +++  +F K D +GDGR+SR EL + F+SLG   +     + +  AD+DGDG+++LDE   L
Subjt:  PVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL

Q9LE22 Probable calcium-binding protein CML274.4e-0635.48Show/hide
Query:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL
        ++L+ +F + D +GDG++S LEL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein3.1e-0735.48Show/hide
Query:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL
        ++L+ +F + D +GDG++S LEL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL

AT1G18210.2 Calcium-binding EF-hand family protein3.1e-0735.48Show/hide
Query:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL
        ++L+ +F + D +GDG++S LEL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  DQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRL

AT1G18530.1 EF hand calcium-binding protein family3.8e-0544.83Show/hide
Query:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDEL
        QL+DIF + D D DG L+ LEL +   SLG   S  +    L + DS+G+G+V  DEL
Subjt:  QLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDEL

AT3G03410.1 EF hand calcium-binding protein family1.7e-0536.07Show/hide
Query:  LRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLL
        L+++F+  D DGDG++   E      SLG  ++   + + ++AAD DGDGY+  DE   L+
Subjt:  LRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLL

AT3G50770.1 calmodulin-like 413.5e-0633.85Show/hide
Query:  SRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLL
        S+++LR +F   D DGDG++S  EL+  F S+G   S   A++++   D+D DG +  ++   L+
Subjt:  SRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGAGTTTCGTCTTCAGCAACGGCGTCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGACCAGCTTCGCGATATTTTCCTCAAGCACGACGGCGACGG
CGACGGCCGACTTTCTCGCTTGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTCTCTCAAAGCCGCCGATTCCGACGGCG
ATGGTTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTGTAAGATGCGATTACGCTATAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTGAGTTTCGTCTTCAGCAACGGCGTCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGACCAGCTTCGCGATATTTTCCTCAAGCACGACGGCGACGG
CGACGGCCGACTTTCTCGCTTGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTCTCTCAAAGCCGCCGATTCCGACGGCG
ATGGTTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTGTAAGATGCGATTACGCTATAATTTGA
Protein sequenceShow/hide protein sequence
MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFDSLGSNWSRFRARQSLKAADSDGDGYVTLDELDRLLDYAVRCDYAII