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Lsi04G015710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEF hand calcium-binding protein family
Genome locationchr04:23269696..23269968
RNA-Seq ExpressionLsi04G015710
SyntenyLsi04G015710
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064376.1 putative calcium-binding protein CML27 [Cucumis melo var. makuwa]1.8e-3582.22Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        M+R+SKT+H R +L+REQL++IFRNHD+DKDGRLST ELTEAFRYIGAFLP YRARHALFH DSDRDGFI EKDFELLVNYAEQR+YT+I
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]4.2e-3282.95Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYT
        MARKSKT+  R KL+REQL VIFRNHD D DGRLST ELT AFRYIGAFLPSYRA HAL H DSD DGFIGEKDFELLVNYAE+RKYT
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYT
KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2976.67Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        MARK+K    R KL+REQL VIFRNHD D DGRLS  ELTEAFRYIGAFLPSYRA HAL + DSDRDGFIGEKDFE LVNY E+R YTI+
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-3382.22Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        MARKSKT+  R KL+REQL VIFRNHD D DGRLST ELT AFRYIGAFLPSYRA HAL H DSD DGFIGEKDFELLVNYAE+RKYT+I
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]1.5e-3482.22Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        M+RKSK ++ R KL+REQL++IFRNHD+DKDGRLST ELTEAFRYIGAFLP+YRARHAL H DSDRDGFIGEKDFE LVNYAEQR+YTII
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein7.5e-3582.22Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        M+RKSK ++ R KL+REQL++IFRNHD+DKDGRLST ELTEAFRYIGAFLP+YRARHAL H DSDRDGFIGEKDFE LVNYAEQR+YTII
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
A0A5A7VDB9 Putative calcium-binding protein CML278.8e-3682.22Show/hide
Query:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
        M+R+SKT+H R +L+REQL++IFRNHD+DKDGRLST ELTEAFRYIGAFLP YRARHALFH DSDRDGFI EKDFELLVNYAEQR+YT+I
Subjt:  MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII
A0A5N6RQV2 Uncharacterized protein1.4e-1253.33Show/hide
Query:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTI
        TR+QL+ IFR+HD D DG+LS  E+  AF Y+G+   SYRA  AL H DSD DG++GE++ + LV+YA +  YTI
Subjt:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTI
A5AWP8 Uncharacterized protein1.4e-1247.62Show/hide
Query:  KTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTI
        KT  S+  L  +QL  IF+ HD + DG+L+ AEL +AF+++GA +P +RA  AL H D+D DG I EK+ + LV YA +  YTI
Subjt:  KTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTI
W9RZZ8 Putative calcium-binding protein CML273.0e-1252.11Show/hide
Query:  EQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKY
        EQL  +F+ HD +KDG LS  ELT+AF  +G+F PS+RA  AL H+D +RDGF+ E +F  LV Y  Q  Y
Subjt:  EQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKY
SwissProt top hitse value%identityAlignment
Q0DJV6 Probable calcium-binding protein CML181.0e-0437.93Show/hide
Query:  QLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        +L  +FR +D + DG++S  EL    R +GA L     R  +  +DSDRDGF+   +F
Subjt:  QLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
Q39419 Polcalcin Bet v 41.2e-0538.81Show/hide
Query:  HSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        H ++K  RE+   IF+  D + DG++S AEL EA + +G+  P    +H +  ID+D DGFI  ++F
Subjt:  HSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
Q8L3R2 Probable calcium-binding protein CML413.5e-0534.43Show/hide
Query:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        ++E+L  +F + D+D DG++S  EL   F  +G ++    A+ A+  +D+D DG +G +DF
Subjt:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
Q8VWY6 Polcalcin Nic t 12.9e-0438.18Show/hide
Query:  IFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFE
        IF+  D + DG++S+AEL E  + +G+ + S   +H +  +D+D DGFI  ++FE
Subjt:  IFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFE
Arabidopsis top hitse value%identityAlignment
AT1G73630.1 EF hand calcium-binding protein family8.8e-0432.79Show/hide
Query:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        T  +L  +F   D + DG++S +EL   F+ +G           L  ID D DGFI +++F
Subjt:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
AT1G76640.1 Calcium-binding EF-hand family protein8.8e-0432.79Show/hide
Query:  LVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLV
        L  +F   D ++DGR+S  EL ++F+ +G  +    A  A+   D D DG +   +F LL+
Subjt:  LVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLV
AT3G50770.1 calmodulin-like 412.5e-0634.43Show/hide
Query:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        ++E+L  +F + D+D DG++S  EL   F  +G ++    A+ A+  +D+D DG +G +DF
Subjt:  TREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
AT4G03290.1 EF hand calcium-binding protein family6.7e-0431.48Show/hide
Query:  IFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF
        +F+  D D DG+++T EL E+F+ +G  +P       +  ID + DG +  ++F
Subjt:  IFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGGAAAAGCAAAACTTGGCATTCGAGGGAGAAGCTAACAAGAGAACAGCTAGTTGTAATCTTTAGAAACCACGACAACGACAAGGACGGCCGCCTGAGCACCGC
CGAACTCACGGAAGCCTTCCGGTATATCGGCGCCTTCCTGCCGTCGTACAGAGCTCGCCACGCTCTTTTTCATATCGATTCCGACAGAGACGGATTTATCGGCGAGAAGG
ATTTCGAATTACTCGTCAATTATGCCGAGCAACGAAAATACACCATCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGGAAAAGCAAAACTTGGCATTCGAGGGAGAAGCTAACAAGAGAACAGCTAGTTGTAATCTTTAGAAACCACGACAACGACAAGGACGGCCGCCTGAGCACCGC
CGAACTCACGGAAGCCTTCCGGTATATCGGCGCCTTCCTGCCGTCGTACAGAGCTCGCCACGCTCTTTTTCATATCGATTCCGACAGAGACGGATTTATCGGCGAGAAGG
ATTTCGAATTACTCGTCAATTATGCCGAGCAACGAAAATACACCATCATTTGA
Protein sequenceShow/hide protein sequence
MARKSKTWHSREKLTREQLVVIFRNHDNDKDGRLSTAELTEAFRYIGAFLPSYRARHALFHIDSDRDGFIGEKDFELLVNYAEQRKYTII