; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G015820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G015820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpolyadenylate-binding protein RBP47-like
Genome locationchr04:23379924..23380307
RNA-Seq ExpressionLsi04G015820
SyntenyLsi04G015820
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591362.1 Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4788.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        ++CF+SIGE+
Subjt:  NSCFSSIGEV

XP_004141245.1 polyadenylate-binding protein RBP47 [Cucumis sativus]7.0e-4988.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQ+NGSDSQPQEPNQRHQQ   PWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYHHQY HHHLPIQ SQPL GSG ENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFSS+GE+
Subjt:  NSCFSSIGEV

XP_008452518.1 PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo]5.7e-5190.91Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQ  QPWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYHHQY HHHLPIQHSQPL GSG ENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFSS+GE+
Subjt:  NSCFSSIGEV

XP_022936173.1 polyadenylate-binding protein RBP47C-like [Cucurbita moschata]1.0e-4788.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        ++CF+SIGE+
Subjt:  NSCFSSIGEV

XP_022976308.1 polyadenylate-binding protein RBP47C-like [Cucurbita maxima]1.0e-4788.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        ++CF+SIGE+
Subjt:  NSCFSSIGEV

TrEMBL top hitse value%identityAlignment
A0A0A0L4T7 Uncharacterized protein3.4e-4988.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQ+NGSDSQPQEPNQRHQQ   PWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYHHQY HHHLPIQ SQPL GSG ENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFSS+GE+
Subjt:  NSCFSSIGEV

A0A1S3BUU0 polyadenylate-binding protein RBP47-like2.8e-5190.91Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQ  QPWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYHHQY HHHLPIQHSQPL GSG ENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFSS+GE+
Subjt:  NSCFSSIGEV

A0A6J1CHT5 polyadenylate-binding protein RBP47-like9.2e-4787.16Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLN
        MQSNGSDSQPQEPNQR QQPQQ W+PMQYPP  MVMP HMMTPQ YM PPLPP YMHYHHQYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL+
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLN

Query:  SCFSSIGEV
        +CF+SIGE+
Subjt:  SCFSSIGEV

A0A6J1FCI8 polyadenylate-binding protein RBP47C-like4.9e-4888.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        ++CF+SIGE+
Subjt:  NSCFSSIGEV

A0A6J1ILR0 polyadenylate-binding protein RBP47C-like4.9e-4888.18Show/hide
Query:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL
Subjt:  MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        ++CF+SIGE+
Subjt:  NSCFSSIGEV

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A1.9e-0941.53Show/hide
Query:  SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPPYMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLH
        S   PQ+  Q+  Q QQ W+    QYP   M M         PH    P +  A    P + +  Y  Q Q HH   Q  QP  GSGG++ KT+WVGDL 
Subjt:  SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPPYMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLH

Query:  HWMDESYLNSCFSSIGEV
        HWMDE+YL++CFS   EV
Subjt:  HWMDESYLNSCFSSIGEV

Q0WW84 Polyadenylate-binding protein RBP47B2.1e-1146.36Show/hide
Query:  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY----QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        PQ+  Q+ QQ QQ    MQYPP     M+    M+   H   P    PY  +H   HQY    QH H   QH     GSG + KT+WVGDL HWMDE+YL
Subjt:  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY----QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFS  GEV
Subjt:  NSCFSSIGEV

Q9LEB3 Polyadenylate-binding protein RBP473.2e-1244.07Show/hide
Query:  NGSD--SQPQEPNQRHQQPQQPWI----------PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLH
        NG D   Q Q+  Q+HQQ QQ W+           MQYP   M M   MM  Q YM      PY   H Q Q      Q    +  S  +NKTIW+GDL 
Subjt:  NGSD--SQPQEPNQRHQQPQQPWI----------PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLH

Query:  HWMDESYLNSCFSSIGEV
         WMDESYL+SCFS  GEV
Subjt:  HWMDESYLNSCFSSIGEV

Q9SX79 Polyadenylate-binding protein RBP47C2.9e-1350.52Show/hide
Query:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS
        +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q   ++      GENKTIWVGDLHHWMDE+YLNS F+S
Subjt:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS

Q9SX80 Polyadenylate-binding protein RBP47C'1.5e-0944.12Show/hide
Query:  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSI
        E NQ    P  P   W  M+YPP        ++ PQ   APP P P+  YH    HHH   Q   ++      GENKTIWVGDL +WMDE+YLNS F+S 
Subjt:  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSI

Query:  GE
         E
Subjt:  GE

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C2.0e-1450.52Show/hide
Query:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS
        +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q   ++      GENKTIWVGDLHHWMDE+YLNS F+S
Subjt:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS

AT1G47490.2 RNA-binding protein 47C2.0e-1450.52Show/hide
Query:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS
        +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q   ++      GENKTIWVGDLHHWMDE+YLNS F+S
Subjt:  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS

AT1G47500.1 RNA-binding protein 47C'1.0e-1044.12Show/hide
Query:  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSI
        E NQ    P  P   W  M+YPP        ++ PQ   APP P P+  YH    HHH   Q   ++      GENKTIWVGDL +WMDE+YLNS F+S 
Subjt:  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSI

Query:  GE
         E
Subjt:  GE

AT1G49600.1 RNA-binding protein 47A1.4e-1041.53Show/hide
Query:  SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPPYMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLH
        S   PQ+  Q+  Q QQ W+    QYP   M M         PH    P +  A    P + +  Y  Q Q HH   Q  QP  GSGG++ KT+WVGDL 
Subjt:  SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPPYMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLH

Query:  HWMDESYLNSCFSSIGEV
        HWMDE+YL++CFS   EV
Subjt:  HWMDESYLNSCFSSIGEV

AT3G19130.1 RNA-binding protein 47B1.5e-1246.36Show/hide
Query:  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY----QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL
        PQ+  Q+ QQ QQ    MQYPP     M+    M+   H   P    PY  +H   HQY    QH H   QH     GSG + KT+WVGDL HWMDE+YL
Subjt:  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY----QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYL

Query:  NSCFSSIGEV
        +SCFS  GEV
Subjt:  NSCFSSIGEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCACCAACAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCAACCATGGTAATGCC
GCACCATATGATGACGCCGCAGCATTATATGGCACCGCCGCTCCCGCCTCCTTATATGCATTATCACCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAAC
CGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATCGGCGAGGTTCAA
TTTTCTCTCTTCTTTTTTCACTTATCTCTACGTTTGTACGCGTTTTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCACCAACAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCAACCATGGTAATGCC
GCACCATATGATGACGCCGCAGCATTATATGGCACCGCCGCTCCCGCCTCCTTATATGCATTATCACCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAAC
CGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATCGGCGAGGTTCAA
TTTTCTCTCTTCTTTTTTCACTTATCTCTACGTTTGTACGCGTTTTTATTTTGA
Protein sequenceShow/hide protein sequence
MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEVQ
FSLFFFHLSLRLYAFLF