; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G016030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G016030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease E
Genome locationchr04:23544737..23545462
RNA-Seq ExpressionLsi04G016030
SyntenyLsi04G016030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5282422.1 hypothetical protein FQA39_LY17537 [Lamprigera yunnana]2.3e-1633.78Show/hide
Query:  EKILEVEETGLEVVVNGLEVVVNGLEVVVSALE--VEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVV
        ++I+ V +  +E+V+  L  +V   E+V+ AL   VE S LV+ A   +V  SEL V+E    +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+
Subjt:  EKILEVEETGLEVVVNGLEVVVNGLEVVVSALE--VEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVV

Query:  EMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEM
        E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E 
Subjt:  EMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEM

Query:  KPVVVESELVVVGSALQVEEEGGIL
         P +VE+  +V+ +  ++ E   ++
Subjt:  KPVVVESELVVVGSALQVEEEGGIL

KAF8355620.1 hypothetical protein PRIPAC_97243 [Pristionchus pacificus]6.6e-1644.64Show/hide
Query:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG
        G VV      V   G  VVV    VVV G  VVV A  V V   VV    P VV E  +VVV+  LVVV+  +VVVE   VVVE  +VVV+    VV+  
Subjt:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG

Query:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV
        +VVVE    VVE  +VVV+    VV+  LVVVE    VVE  +VVV+    VV+  +VVVE    VVE  +VVV+    VV+  +VVVE   VVVE  +V
Subjt:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV

Query:  VVEMKPVVVESELVVVGSALQVEE
        VV+   VVV+  +VVV + + V E
Subjt:  VVEMKPVVVESELVVVGSALQVEE

MBK9277303.1 efflux RND transporter periplasmic adaptor subunit [Candidatus Obscuribacter sp.]1.1e-1347.46Show/hide
Query:  VEVSALVVGARKPVVGESELVV------VEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVE
        VE  + V+ A+ PVV      V      VE KL  +E+ L  +E KP VVE+    VE KP VVE+   VVE KP VVE+   VVE KP VVE+   VVE
Subjt:  VEVSALVVGARKPVVGESELVV------VEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVE

Query:  MKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVE
         KP VVE+   VVE KP VVE+   VVE KP  VE+    VE KP VVE+   VVE KP VVE+   +VE K  + +
Subjt:  MKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVE

WP_064435472.1 ribonuclease E [Pseudoalteromonas neustonica]1.1e-1347.62Show/hide
Query:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK
        SA EV  +A VV    P V +   VV E    VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  
Subjt:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK

Query:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE
        P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  PVVVE   VV      VE+
Subjt:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE

WP_170174122.1 ribonuclease E [Pseudoalteromonas sp. NEC-BIFX-2020_002]8.1e-1447.62Show/hide
Query:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK
        SA EV  +A VV    P V +   VV E    VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  
Subjt:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK

Query:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE
        P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  PVVVE   VV      VE+
Subjt:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE

TrEMBL top hitse value%identityAlignment
A0A2A6CTN9 Uncharacterized protein3.2e-1644.64Show/hide
Query:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG
        G VV      V   G  VVV    VVV G  VVV A  V V   VV    P VV E  +VVV+  LVVV+  +VVVE   VVVE  +VVV+    VV+  
Subjt:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG

Query:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV
        +VVVE    VVE  +VVV+    VV+  LVVVE    VVE  +VVV+    VV+  +VVVE    VVE  +VVV+    VV+  +VVVE   VVVE  +V
Subjt:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV

Query:  VVEMKPVVVESELVVVGSALQVEE
        VV+   VVV+  +VVV + + V E
Subjt:  VVEMKPVVVESELVVVGSALQVEE

A0A4X3PSW1 Uncharacterized protein3.2e-1644.64Show/hide
Query:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG
        G VV      V   G  VVV    VVV G  VVV A  V V   VV    P VV E  +VVV+  LVVV+  +VVVE   VVVE  +VVV+    VV+  
Subjt:  GKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKP-VVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESG

Query:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV
        +VVVE    VVE  +VVV+    VV+  LVVVE    VVE  +VVV+    VV+  +VVVE    VVE  +VVV+    VV+  +VVVE   VVVE  +V
Subjt:  LVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLV

Query:  VVEMKPVVVESELVVVGSALQVEE
        VV+   VVV+  +VVV + + V E
Subjt:  VVEMKPVVVESELVVVGSALQVEE

A0A7J6ZMV5 Uncharacterized protein1.1e-1633.78Show/hide
Query:  EKILEVEETGLEVVVNGLEVVVNGLEVVVSALE--VEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVV
        ++I+ V +  +E+V+  L  +V   E+V+ AL   VE S LV+ A   +V  SEL V+E    +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+
Subjt:  EKILEVEETGLEVVVNGLEVVVNGLEVVVSALE--VEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVV

Query:  EMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEM
        E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E  P +VE+  +V+E 
Subjt:  EMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEM

Query:  KPVVVESELVVVGSALQVEEEGGIL
         P +VE+  +V+ +  ++ E   ++
Subjt:  KPVVVESELVVVGSALQVEEEGGIL

A0A7Y2KEH1 Ribonuclease E3.9e-1447.62Show/hide
Query:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK
        SA EV  +A VV    P V +   VV E    VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  
Subjt:  SALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMK

Query:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE
        P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  P VVE   VV E  PVVVE   VV      VE+
Subjt:  PGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGSALQVEE

W6ND12 Uncharacterized protein (Fragment)4.6e-1541.05Show/hide
Query:  MEMGKVVAEKILEVEETGLEVVVNGLEVVVNGLEVV-VSALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVV
        +++G VV +  + V + G EVV  G  VV  G+ VV V  + V+V A VV     VV     VVV++ +VVV+ G+VVV++  VVV+ G VVV++   VV
Subjt:  MEMGKVVAEKILEVEETGLEVVVNGLEVVVNGLEVV-VSALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVV

Query:  ESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVES
        + G+VVV++   VV+ G  VV++   VV+ G+VVV++   VV+ G+VVV++   VV+ G+VVV++   VV+ G+VVV++   VV+ G+VVV++  VVV  
Subjt:  ESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVES

Query:  GLVVVEMKPVVVESELVVVGSALQVEEEG
        G+ VV++  VVV+  +VVV     V + G
Subjt:  GLVVVEMKPVVVESELVVVGSALQVEEEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGGGGAAGGTGGTGGCGGAGAAAATACTGGAGGTGGAGGAGACTGGACTGGAGGTGGTGGTGAATGGACTGGAGGTGGTGGTGAATGGACTGGAGGTGGTGGT
GAGTGCACTGGAGGTGGAGGTGAGTGCACTGGTGGTGGGGGCGAGAAAACCGGTGGTGGGGGAGAGTGAACTGGTGGTGGTGGAGATGAAACTGGTGGTGGTGGAGAGTG
GACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCG
GGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGT
GGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGG
AGAGTGGACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGAACTGGTGGTGGTGGGGAGT
GCACTGCAGGTGGAGGAGGAGGGCGGTATCTTGGGACTGGTGACTGATCAGAAGGATCATCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGGGGAAGGTGGTGGCGGAGAAAATACTGGAGGTGGAGGAGACTGGACTGGAGGTGGTGGTGAATGGACTGGAGGTGGTGGTGAATGGACTGGAGGTGGTGGT
GAGTGCACTGGAGGTGGAGGTGAGTGCACTGGTGGTGGGGGCGAGAAAACCGGTGGTGGGGGAGAGTGAACTGGTGGTGGTGGAGATGAAACTGGTGGTGGTGGAGAGTG
GACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCG
GGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGT
GGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGGGGTGGTGG
AGAGTGGACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATGAAACCGGTGGTGGTGGAGAGTGAACTGGTGGTGGTGGGGAGT
GCACTGCAGGTGGAGGAGGAGGGCGGTATCTTGGGACTGGTGACTGATCAGAAGGATCATCAATAG
Protein sequenceShow/hide protein sequence
MEMGKVVAEKILEVEETGLEVVVNGLEVVVNGLEVVVSALEVEVSALVVGARKPVVGESELVVVEMKLVVVESGLVVVEMKPVVVESGLVVVEMKPGVVESGLVVVEMKP
GVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPGVVESGLVVVEMKPVVVESGLVVVEMKPVVVESELVVVGS
ALQVEEEGGILGLVTDQKDHQ