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Lsi04G016660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G016660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RADIALIS-like 3
Genome locationchr04:24095584..24100837
RNA-Seq ExpressionLsi04G016660
SyntenyLsi04G016660
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0047429 - nucleoside-triphosphate diphosphatase activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591315.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]7.2e-3583.91Show/hide
Query:  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEE
        +AMGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPAGRGF FVD+E
Subjt:  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEE

XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.8e-3893.1Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]1.0e-4196.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]9.0e-3875.23Show/hide
Query:  CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRG
        C    +K++ D K     + AMGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RG
Subjt:  CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRG

Query:  FCFVDEEQR
        FCF+DEE+R
Subjt:  FCFVDEEQR

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]1.8e-4197.7Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCFVDEEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein8.8e-3993.1Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A1S3CPA0 protein RADIALIS-like 35.0e-4296.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A5D3D7Z0 Protein RADIALIS-like 35.0e-4296.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A6J1CC55 protein RADIALIS-like 34.4e-3875.23Show/hide
Query:  CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRG
        C    +K++ D K     + AMGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RG
Subjt:  CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRG

Query:  FCFVDEEQR
        FCF+DEE+R
Subjt:  FCFVDEEQR

A0A6J1IJ89 protein RADIALIS-like 31.3e-3482.76Show/hide
Query:  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEE
        +AMGSG NWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPAGRGF FVD+E
Subjt:  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEE

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.1e-2560.92Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQS
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G    +E++ ++
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQS

Q1A173 Protein RADIALIS-like 65.0e-2372.73Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

Q58FS3 Transcription factor RADIALIS4.5e-2469.44Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q6NNN0 Protein RADIALIS-like 31.6e-2466.22Show/hide
Query:  AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        +M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q9SIJ5 Protein RADIALIS-like 22.9e-2363.22Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQR
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+R
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.5e-2264.79Show/hide
Query:  AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        +M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 63.6e-2472.73Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 63.6e-2472.73Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT2G21650.1 Homeodomain-like superfamily protein2.1e-2463.22Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQR
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+R
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQR

AT4G39250.1 RAD-like 12.2e-2660.92Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQS
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G    +E++ ++
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACCAAATATGTAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTT
TGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGC
TCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGCCAA
AGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAAGCCCATTTGCATTGAAGCCCG
TTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGGAGTCATGGATGCTAATTCGTCTTCGTG
TAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAA
TCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGT
CTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACCAAATATGTAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTT
TGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGC
TCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGCCAA
AGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAAGCCCATTTGCATTGAAGCCCG
TTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGGAGTCATGGATGCTAATTCGTCTTCGTG
TAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAA
TCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGT
CTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG
Protein sequenceShow/hide protein sequence
MGNQICRNGSKKSTTDLKFDIAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQ
SFPEYFKEKLIKKDEESTIALKYEMWEDEKPICIEARLRKAHTNWFKSRDPKDSKIKFRPAERRESWMLIRLRVRCGPFSIFPACTVELLALSGFDETEISGCVLSLMDE
SIFFIFPSSAQCVKVQELVSNCLLVFFGCSCDKILRVCFRGIGMSIADTDI